Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1578 ATGTGGGCTCTTCGTCGAGCTTCGATCCCTCTCAGGACCCGACGGTTTAATGTGAGAGCTTCTTGTGTCAAATTAGCGCGAACTACTTGTGTGGAAGAAGAGAGTGGTATCTCTGAGTCTCGTGGAATAACGTACAGTGGATTTTTGTCGCCGAAGGTGCATTACCATTCAGGACATAACGCTTCCCTGAATTTTACTGTGAGGAGGTGTGGACTTTCTTCAAGTAGCACGAAAGAGGAGGATGATTTGGAGGATGGGTTTTCTGAGCTGGAGACGCCTGCTGGCGATGGAAATGAGAGTGATAGTCTGTTAACTTCTGATACCGAGCTATCTGATAATGGTGAGAAGGAGGATGTTGAGGAGTCGCGCAATGAGGTTGATGAGGCGgccaaggaaaaagaaaaaccgCGTCGTGTAAGGGTTGAATCGGAGCTATTCAATGAGATATTGAAAGCACCGGGTACTTCTCTTCATTTGGCTCTGGACAAGTGGTTAGAAGAAGGGAATGAACTAACAAGAGAGGAGGTCTCGCTGGCCATGGTTAATCTTCGAAAGAGGAAGATGTTTGGGAGAGCTTTGCAGCTCTCAGAGTGGCTTGAGTCAAAAAAGCAGTTTGAATTTATTGAAAGAGATTATGCTAGTCGACTTGATTTAATTGCCAAAGCGCGTGGCTTACAGAAGGCAGAGGTCTACATTGAGACTATTCCAGAATCTTTTAGAAGTGAGATAATCTACCGGACTTTATTGGCTAACTGTGTCAGTCAGAACAATGTGAAGAAAGCAGAGGAAGTTTTCAGTAAAATGAAGGATTTGAATTTTCCTGTTACAGTATTTGCTTGCAATCAGTTGCTATTTCTGTATAAGAGGAATGACAAGAAGAAAATAGCTGATGTGTTATTGTTGATGGAAAATGAGAATATCAAACCTTCTTCTCTTACTTATGAAATCTTAATAGACACGAAAGGCCAGTCCAAAGATATTGACGGAATGGATCAAATTGTTGATAGAATGAAGGCTCAAGGCATTGAACCAGGCATCAAAACACAGGCTGTTTTGGCTCGGCATTACATCTCAGCTGGGCTTCAAGATAAAGCTGAAACTTTATTGAAGGAGATGGAAGGTGAAAACTTGAAACAGAATCGGTGGCTATGCCGAATTTTGCTTCCCCTCTATGCAAACCTGGGAAAGGAGGATGAAGTGGGAAGAATTTGGAATGTCTGTGAGACAAACCCTCGGCATGACGAGTGTCTGGCTGCAATTGAAGCTTGGGGAAAGTTGAATATAATTGATGAAGCAGAGAAAGTTTTTGAGATGATGATAAAGAAATGGAAGCTTTCTTCCAAGACCTGCTCCGGACTACTGAAGGTTTATGCAAATAATAAGATGCTAATGAAGGGTAAGGATCTTATTAAGCGAATGGGAGATGGTGGGTGCAGAATAGGGCCATTGACCTGGGACGCAATAGTGAAACTTTATGTCCAAGCTGGGGAAGTGGAGAAGGCAGACTCTGTTCTTCAGAAGGCAACCCAACAGAGCCAGTTGAAACCTATATTTTCTACCTACCTAACTATTTTGGAGCAGTATGCCAACAGGGGTGACATCCATAATTCGGAAAAGACTTTCTATAGAATGAAACAAGCTGATTATCCATCTAGACCAAAGATGTACCAAGTTCTAATGAATGCCTATATAAATGCAAAGCTTCCAGCATATGGGATTAGGGACAGGTTGAGAGCTGATGGCATATATCCCAATAGAACTTTGGCAAATCAGTTGATTCAAGTTGATGGATTTAGGAAGAATCCAGTTTCCGATTTGCTTGATTGA 1827 0.4182 MWALRRASIPLRTRRFNVRASCVKLARTTCVEEESGISESRGITYSGFLSPKVHYHSGHNASLNFTVRRCGLSSSSTKEEDDLEDGFSELETPAGDGNESDSLLTSDTELSDNGEKEDVEESRNEVDEAAKEKEKPRRVRVESELFNEILKAPGTSLHLALDKWLEEGNELTREEVSLAMVNLRKRKMFGRALQLSEWLESKKQFEFIERDYASRLDLIAKARGLQKAEVYIETIPESFRSEIIYRTLLANCVSQNNVKKAEEVFSKMKDLNFPVTVFACNQLLFLYKRNDKKKIADVLLLMENENIKPSSLTYEILIDTKGQSKDIDGMDQIVDRMKAQGIEPGIKTQAVLARHYISAGLQDKAETLLKEMEGENLKQNRWLCRILLPLYANLGKEDEVGRIWNVCETNPRHDECLAAIEAWGKLNIIDEAEKVFEMMIKKWKLSSKTCSGLLKVYANNKMLMKGKDLIKRMGDGGCRIGPLTWDAIVKLYVQAGEVEKADSVLQKATQQSQLKPIFSTYLTILEQYANRGDIHNSEKTFYRMKQADYPSRPKMYQVLMNAYINAKLPAYGIRDRLRADGIYPNRTLANQLIQVDGFRKNPVSDLLD 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1578 608 MobiDBLite consensus disorder prediction 110 137 - -
Ssu4g1578 608 TIGRFAM PPR: pentatricopeptide repeat domain 244 276 IPR002885 -
Ssu4g1578 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 275 IPR002885 -
Ssu4g1578 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Ssu4g1578 608 Gene3D Tetratricopeptide repeat domain 240 422 IPR011990 GO:0005515
Ssu4g1578 608 Pfam PPR repeat 484 507 IPR002885 -
Ssu4g1578 608 Pfam PPR repeat 449 478 IPR002885 -
Ssu4g1578 608 Pfam Pentacotripeptide-repeat region of PRORP 244 404 IPR033443 -
Ssu4g1578 608 Gene3D Tetratricopeptide repeat domain 423 606 IPR011990 GO:0005515
Ssu4g1578 608 MobiDBLite consensus disorder prediction 76 137 - -
Ssu4g1578 608 PANTHER OS01G0280400 PROTEIN 47 608 - -
Ssu4g1578 608 PANTHER OS12G0527900 PROTEIN 47 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1578 Ssu-Chr4 27052438 27059630 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1578 149 508 EF-hand Containing Proteins AT1G02150 25.886 3.33e-32 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1578 - - gmx:100500196 1026.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1578 4 27052438 27059630 Ssu7g1213 7 26864971 26865381 ECH
Ssu4g1578 4 27052438 27059630 Ssu4g1578 4 27052438 27059630 ECH