Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0838 ATGGGTGCTTCATTGGCTCCAGGAGACTCTAAATTTACTGATTTGATCAAAGAGTGCGATGAGCTGGTTGCagAGGAATCTGGTGCCATACCCATACAAGAAAAGACCACAACACAGGGTGTTGCTCCAGAAGCTGTTCAGCCAGAGAATGATCTTCCAGAGCCACTGGCAATAACAGTGGCTAAACCTAAATACAGGCATGAATTCTACCAGAAACCTGATCAGGTGGTTGTTACCATATTTGGAAAGGGCATTCCACTAGACAGCATTACTGTTGACTTTGGTGAACAAATACTAAGTGTTAGCATTAATATCCCTGGCGAAGATGCATATGTCTGCCAAACTCGCTTATTTGGAAAGATCATACCCACCAAATGCCGGTATGAAGTTTTGTCCACCAAAATTGAAATTCGCCTGGCAAAAACAGAACCTATCCACTGGACGTCTCTAGAATTCAACAATGGTAGCACAGTTCTTCAGAGGGTTAATGTTTCACCAGTTGCTGGAGGTGAAAGACCTACTTATCCATCCTCCAAACCAAGAAGAACAGATTGGGACAAGCTGGAAGCCCAAGTTAAGAAAGAGgagaaagaagaaaagcttGATGGTGATGCAGCGTTGAACAAATTTTTCCGTGAGATATATCAAGATGCAGATGAAGACACAAGAAGAGCAATGAGCAAATCATTTGTGGAGTCAAATGGAACAGTACTGTCTACAAACTGGAAAGAAGTGGGATCAAAGAGGGTGGAGGGAAGTCCTCCTGATGGTATGGAGTTAAAGAAATGGGAATATTGA 798 0.4185 MGASLAPGDSKFTDLIKECDELVAEESGAIPIQEKTTTQGVAPEAVQPENDLPEPLAITVAKPKYRHEFYQKPDQVVVTIFGKGIPLDSITVDFGEQILSVSINIPGEDAYVCQTRLFGKIIPTKCRYEVLSTKIEIRLAKTEPIHWTSLEFNNGSTVLQRVNVSPVAGGERPTYPSSKPRRTDWDKLEAQVKKEEKEEKLDGDAALNKFFREIYQDADEDTRRAMSKSFVESNGTVLSTNWKEVGSKRVEGSPPDGMELKKWEY 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0838 265 Pfam SGS domain 184 263 IPR007699 -
Ssu7g0838 265 ProSiteProfiles CS domain profile. 62 151 IPR007052 -
Ssu7g0838 265 CDD p23_CS_SGT1_like 68 151 - -
Ssu7g0838 265 Gene3D - 63 153 IPR008978 -
Ssu7g0838 265 ProSiteProfiles SGS domain profile. 174 265 IPR007699 -
Ssu7g0838 265 PANTHER PHOSPHATASE-RELATED 2 265 - -
Ssu7g0838 265 Pfam CS domain 66 141 IPR007052 -
Ssu7g0838 265 SUPERFAMILY HSP20-like chaperones 60 157 IPR008978 -
Ssu7g0838 265 PANTHER PROTEIN SGT1 HOMOLOG 2 265 IPR044563 GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0838 Ssu-Chr7 16853032 16855256 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0838 K12795 - gmx:100777554 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0838 7 16853032 16855256 Ssu2g2895 2 90223441 90227441 ECH
Ssu7g0838 7 16853032 16855256 Ssu7g0838 7 16853032 16855256 ECH