Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2895 ATGGCGAAGGTGCTGGAGAAGAAAGCCAAGGAAGCATTCTTTGACGACGACTTCGCTCTCGCCGTTGATCTCTACTCTGAAGCGATCCGATTGGATCCCAACGACGCCCATCTCTTCGCTGACAGAGCCCAAACCCATATTAAGCTCAACGCTTTCACTGGTAGCTATTCTATCTTTCCTCAATCTCACTCACTTACTCACTCACTCACACctgtttatttatttccatgTGCAGAAGCGATTGCCGATGCGAACAAAGCTATCCAATTGAACCCTTCCTTGCCCAAGGCCTATCTTCGAAAAGGCACCGCTTGTATGAAGCTCGAAGAATATCACACTGCCAAGGTAGCGCTACAAAACGGTGCCGTTTTGGCGCAAGACGATTCCAGATTCGCCAAGTTAATTGAAGAATGCGATCGCTGTATTGCAGAGGAATCAAATGGTCTTACTAGCACATTACCATCAAATGGGTCCATAACATCTGTACCATCTGGTAATGGTTCCCATTTGAGCAATAGAAATGAAGGGATGACTAAAGAAGCTGAAGGAGACAGTTTGGTATCCCAAATCAATGAAGTCACACTAAACAGACCAAAATACAGACATGAATACTACCAGAAGCCAGAAGAAGTGGTTGTGACAATATTTGCAAAAGGAATATCAGCAAAAGATGTGGTTGTTGACTTCGGTGAACAGATTCTTAGTGTTACTATTGATGTTCCTGGCCAAGATGCCTATCATTATCAACCTCGATTGTTTGGCAAGATAATACCCAATAACTGCAGAGTTGAGGTGTTGTCAACCAAAATTGAAATCCGTCTTGCAAAAGCTGAAGCTATTAATTGGACATCTCTGGAATATAGCGAGGATACACTtccccaaaaaataaataagcctATAGTTCAATCTGAAAGGCCTGCATACCCATCATCAAAACCAAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAATGAGgagaaagaagaaaaacttgATGGTGATGCTGCTTTGAATAAATTGTTCCGTGATATTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAATCTTTTTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGCAGTCCTCCAGAAGGTATGGAGTTGAAAAAATGGGAGTATTGA 1197 0.4069 MAKVLEKKAKEAFFDDDFALAVDLYSEAIRLDPNDAHLFADRAQTHIKLNAFTGSYSIFPQSHSLTHSLTPVYLFPCAEAIADANKAIQLNPSLPKAYLRKGTACMKLEEYHTAKVALQNGAVLAQDDSRFAKLIEECDRCIAEESNGLTSTLPSNGSITSVPSGNGSHLSNRNEGMTKEAEGDSLVSQINEVTLNRPKYRHEYYQKPEEVVVTIFAKGISAKDVVVDFGEQILSVTIDVPGQDAYHYQPRLFGKIIPNNCRVEVLSTKIEIRLAKAEAINWTSLEYSEDTLPQKINKPIVQSERPAYPSSKPRTRDWDKLEAQVKNEEKEEKLDGDAALNKLFRDIYQNADEDMRRAMSKSFLESNGTVLSTDWKEVGSKKVEGSPPEGMELKKWEY 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2895 398 CDD p23_CS_SGT1_like 203 286 - -
Ssu2g2895 398 MobiDBLite consensus disorder prediction 152 183 - -
Ssu2g2895 398 PANTHER PROTEIN SGT1 HOMOLOG 78 398 IPR044563 GO:0051087
Ssu2g2895 398 PANTHER PROTEIN SGT1 HOMOLOG 1 74 IPR044563 GO:0051087
Ssu2g2895 398 Pfam CS domain 201 276 IPR007052 -
Ssu2g2895 398 Pfam SGS domain 316 396 IPR007699 -
Ssu2g2895 398 PANTHER PROTEIN SGT1 HOMOLOG A 78 398 - -
Ssu2g2895 398 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Ssu2g2895 398 MobiDBLite consensus disorder prediction 152 174 - -
Ssu2g2895 398 SUPERFAMILY TPR-like 2 133 IPR011990 GO:0005515
Ssu2g2895 398 PANTHER PROTEIN SGT1 HOMOLOG A 1 74 - -
Ssu2g2895 398 Gene3D Tetratricopeptide repeat domain 1 150 IPR011990 GO:0005515
Ssu2g2895 398 Gene3D - 198 288 IPR008978 -
Ssu2g2895 398 SUPERFAMILY HSP20-like chaperones 196 293 IPR008978 -
Ssu2g2895 398 ProSiteProfiles CS domain profile. 197 286 IPR007052 -
Ssu2g2895 398 SMART tpr_5 2 35 IPR019734 GO:0005515
Ssu2g2895 398 SMART tpr_5 95 128 IPR019734 GO:0005515
Ssu2g2895 398 ProSiteProfiles SGS domain profile. 307 398 IPR007699 -
Ssu2g2895 398 MobiDBLite consensus disorder prediction 378 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2895 Ssu-Chr2 90223441 90227441 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2895 K12795 - gmx:100784022 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2895 2 90223441 90227441 Ssu2g2895 2 90223441 90227441 ECH
Ssu7g0838 7 16853032 16855256 Ssu2g2895 2 90223441 90227441 ECH