LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu7g0542	ATGGTTTTGAAGTCAATGGTTGCTTCAGCGAGCGATCTAAGTCTCGTGAGCGTTGCAGGAAACCGTCCACTTGATTTGAAGAATTGGGTTTTCGGTGGCCGAGTCATTAGGCTTGGGTTTGGTGTCAACAGAGGGAAATGGAACGGGAATGAGGGGTTTAACTTCAAGGTTCGTGCCGCAGTGGAAGTGGGTGTGGAGGGATCGAAGAGTGAGGCTTTGGAGGGTGGTGCATTTGGGTTGGACGTGGTTTCAGAGGGAGAGTTAACGGTGAAGGGGTTTGCAGGGTTGAGAAAGACCAAGCTCGTGTGCACCGTTGGTCCTGCTTGCAGCTCGTTGGAGGATCTTGAGAAGTTGGCCTTGGGAGGCATGAGTGTTGCCAGGTTCAACATGTGCCATGGCACTAGGGAGTGGCACCGTGATGTGATTAGGAAGATCAAGAAGTTGAATGAGGAGAAAGGGTTGTGTGTTTCTGTGATGATTGACACCGAGGGTAGTCAGATTCATGTTGTTGATCATGGAGCTCCTTCCTCGGTTAAAGTAGAGGAAGGTTCAATGTGGCGGTTTACTGCTGAGCATTTTGAGGGTTCTCGCCCATTCACTGTTCAAACAAACTATAGAGGTTTTTCTGAAGGTATTGAAGTGGGTGATGAACTTGTTATTGATGGTGGAATGGCATGCTTTGAAGTCATTGAAAAGACTGGAAATGATTTGCATTGTAAGTGCATAGATGCTGGTCTTTTTCTGCCTGGAGCCAAATTTAGTTTCTGGAGAGATGGAATGCTTGTGAGGAGGGATTACAAGCTCCCCACTCTATCAACAAAGGATTGGGCTGACATTGACTTTGGTATAGCAGAGGGAGTTGATTTTTTTGCCTTATCCTTTGTCAATCATGCAGATTCTGTTAAGGATCTAAAGAAGTACCTCTCTACGAAGTCAACCAAATCCATAAAAGTTTTGGCAAAGATAGAGAGCTTAGAATCCCTTCATAAACTGGAGGAAATAGTGCGAGCTTCTGATGGAATCATGGTGGCTCGTGGTGACCTTGGGGTTGAAATACCACTTGAACAGATTCCTACAGTCCAAGAGGATATAATTTACGTATGCAGACAACTAAACAAGCCAGTGATTGTAGCTTCTCAGCTTCTTGAGTCAATGGTTGAGTATCCAACGCCAACACGCGCTGAGGTAGCAGATGTTTCTGAAGCAATTCGACAGTACGCTGATGCTTTGATGTTGTCTGGTGAATCAGCTATTGGATCATATGGACGCAAAGCTTTGGCAGTCTTGGATATGACTAGCAGTAGAATGGAATCGTGGAGTCGGGAGGAAAACAGACAAGGTCTTCTCAACCACCATCAACTTGGAGTATCGTTGCCAGAATGCATCACTGAGCAAATATGCAATTGTGCTGTTGAAATGGCCAACAACCTTGGTGTGGATGCCATCTTTGTATACACAAAGCATGGACACATGGCATCACTTCTATCACGCAACCGCCCGAATCCTCCCATCTTTGCTTTCACCAACGATGACAGTACCCGCATGGCTCTGAATTTGCAATGGGGTGTTGTACCCCTTCTGGTTGATTTGTCAGATGATGCTGAATCTAACATCTCAAAGTCTGTCCACCTTATGAAATCTAAAGGATTGATCAGCCAAGGAGATGTTGTTCTAGTGGTCTCAGATGTTGCTCCATCACGTGCCACTCCTATGGCTTTCCAGTCAATTCAGGTGAAGACAATTATCTAA	1749	0.4557	MVLKSMVASASDLSLVSVAGNRPLDLKNWVFGGRVIRLGFGVNRGKWNGNEGFNFKVRAAVEVGVEGSKSEALEGGAFGLDVVSEGELTVKGFAGLRKTKLVCTVGPACSSLEDLEKLALGGMSVARFNMCHGTREWHRDVIRKIKKLNEEKGLCVSVMIDTEGSQIHVVDHGAPSSVKVEEGSMWRFTAEHFEGSRPFTVQTNYRGFSEGIEVGDELVIDGGMACFEVIEKTGNDLHCKCIDAGLFLPGAKFSFWRDGMLVRRDYKLPTLSTKDWADIDFGIAEGVDFFALSFVNHADSVKDLKKYLSTKSTKSIKVLAKIESLESLHKLEEIVRASDGIMVARGDLGVEIPLEQIPTVQEDIIYVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAIRQYADALMLSGESAIGSYGRKALAVLDMTSSRMESWSREENRQGLLNHHQLGVSLPECITEQICNCAVEMANNLGVDAIFVYTKHGHMASLLSRNRPNPPIFAFTNDDSTRMALNLQWGVVPLLVDLSDDAESNISKSVHLMKSKGLISQGDVVLVVSDVAPSRATPMAFQSIQVKTII	582

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu7g0542	582	SUPERFAMILY	PK C-terminal domain-like	459	565	IPR036918	-
	Ssu7g0542	582	Gene3D	-	99	429	IPR040442	-
	Ssu7g0542	582	PANTHER	PYRUVATE KINASE	43	581	-	-
	Ssu7g0542	582	Pfam	Pyruvate kinase, barrel domain	97	438	IPR015793	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Ssu7g0542	582	SUPERFAMILY	Phosphoenolpyruvate/pyruvate domain	91	440	IPR015813	GO:0003824
	Ssu7g0542	582	PRINTS	Pyruvate kinase family signature	395	413	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Ssu7g0542	582	PRINTS	Pyruvate kinase family signature	154	170	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Ssu7g0542	582	PRINTS	Pyruvate kinase family signature	414	430	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Ssu7g0542	582	PRINTS	Pyruvate kinase family signature	287	301	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Ssu7g0542	582	PRINTS	Pyruvate kinase family signature	318	344	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Ssu7g0542	582	PRINTS	Pyruvate kinase family signature	370	394	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Ssu7g0542	582	PRINTS	Pyruvate kinase family signature	345	369	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Ssu7g0542	582	TIGRFAM	pyruv_kin: pyruvate kinase	97	567	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Ssu7g0542	582	Gene3D	-	432	572	IPR036918	-
	Ssu7g0542	582	Pfam	Pyruvate kinase, alpha/beta domain	464	563	IPR015795	-
	Ssu7g0542	582	PANTHER	PYRUVATE KINASE	43	581	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Ssu7g0542	582	Gene3D	-	166	268	IPR015806	GO:0004743\|GO:0006096
	Ssu7g0542	582	ProSitePatterns	Pyruvate kinase active site signature.	316	328	IPR018209	GO:0004743\|GO:0006096
	Ssu7g0542	582	SUPERFAMILY	PK beta-barrel domain-like	167	250	IPR011037	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu7g0542	Ssu-Chr7	9915281	9920019	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu7g0542	K00873		-	gmx:100780644	1039.64

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu7g0542	7	9915281	9920019	Ssu7g0542	7	9915281	9920019	ECH
	Ssu2g2645	2	86383296	86389146	Ssu7g0542	7	9915281	9920019	PCT