Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0519 ATGAAGCTTCGGAGATCTTCGTTGTTTCTAGGGTTTCTGCTGCTGTTCCTTTCGCCGCCGTCAATGGCGAAATTCGTGGTGGAGAAGAACAGCTTGACGGTGACGTCGCCGGACAACGTCAAGGGCACGCACGACAGCGCGATTGGCAACTTCGGGATACCCCAATACGGAGGTAGCATGGCTGGGAACGTGGTGTACCCTAAGGACAACAAAAAGGGTTGCAAGGAGTTCGACGAGTATGGGATTTCCTTCAAATCCAAACCCGGTGCTCTTCCCACTTTCGTTTTGCTCGATCGAGGAGATTGCTTCTTTGCTTTGAAGGTCTGGAATGCACAGAAGGCTGGAGCTTCAGCTGTTCTTGTTGCGGATGATATTGAGGAAAAGTTGATAACCATGGACACTCCTCAGGAGGATGGGTTGTCTGCAAAATACATAGAGAACATAACAATACCGTCTGCTCTCATTGAAAAAAGTTTTGGTGAAAAATTAAAGGATGCCATAAGTAATGGGGATATGGTCAATGTAAATCTTGATTGGAGAGAGGCTGTCCCCCACCCGGACGATCGTGTGGAGTATGAATTGTGGACCAACAGCAATGATGAGTGTGGAGTTAAGTGTGATATGTTGATGGAATTTGTGAAGGATTTTAAGGGTGCAGCACAGATATTGGAGAAAGGTGGTTATACTCAATTTACACCCCATTATATAACTTGGTACTGTCCTCAGGCATTCACATTGAGCAAACAATGCAAGTCCCAGTGCATAAATCATGGAAGATATTGTGCTCCGGATCCTGAGCAGGATTTCAGCACTGGTTATGATGGGAAAGATGTggttattgaaaatttaaggCAGCTATGTGTTTTTAAGGTGGCAAATGAAACCAAAAAGCCTTGGGTGTGGTGGGACTATGTCACTGATTTTCAAATTAGATGCCCaatgaaggagaaaaaataCAACAAGAAATGTGCAGATGCTGTCATTGAATCACTTGGCCTTGatattaaaaagattgaaaGGTGCATGGGAGATTCAAATGCTGATTCAGAAAATCCTGTTTTGAAAGAAGAGCAAGATGCCCAAGTTGGGAAGGGGTCACGCGGTGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTACCGAGgaAAATTGGAGAAAGGTGCTGTTATGAAAGCTATTTGTGCTGGTTTTGAAGAAACTACTGAACCGGCTGTTTGTTTGAGCAGTGATGTGGAGACAAATGAGTGCTTGCAGAATAATGGTGGTTGTTGGCAGGATAAAGCAGCTAACATCACTGCATGCAAGGACACATTCCGTGGGAGAGTATGTGAATGCCCCATGGTGGATGGTGTGCAGTTCAAAGGAGATGGTTATACAACCTGTGAAgCTAGTGGACCTGGACGGTGCAAGATAAACAATGGAGGTTGCTGGCATGAAACTCTTAATAGACATGCATTTTCTGCTTGTTTGGATAATGGAGGGGTTAAATGCCAATGTCCTGCAGGCTTTAAAGGTGATGGTGTCAAAAATTGTGAAGACATTGATGAATGCAAAGAGAAGAAAGCTTGTCAGTGCCCTGAATGTAGCTGCAAGAATACCTGGGGCAGCTATGAATGCACTTGTAGTGGGGATCTTCTGTATATAAGGGACCATGATACCTGCATAAGCAAAACTGCCAGTCAGGAGGGAAAATCAGCTTGGGCTGTTTTTTGGGTTATTTTAATTGGCTTAGTTGTGGCTGCTGCTGGGGCATACCTTGTGTACAAATATAGAATAAGGTCATATATGGATTCTGAAATCAGAGCCATCATGGCACAATATATGCCCTTGGACAGCCAAGCAGAAGTTGTAAATCATGTGGACGAAGAAAGAGCGTGA 1887 0.4324 MKLRRSSLFLGFLLLFLSPPSMAKFVVEKNSLTVTSPDNVKGTHDSAIGNFGIPQYGGSMAGNVVYPKDNKKGCKEFDEYGISFKSKPGALPTFVLLDRGDCFFALKVWNAQKAGASAVLVADDIEEKLITMDTPQEDGLSAKYIENITIPSALIEKSFGEKLKDAISNGDMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGYTQFTPHYITWYCPQAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVIENLRQLCVFKVANETKKPWVWWDYVTDFQIRCPMKEKKYNKKCADAVIESLGLDIKKIERCMGDSNADSENPVLKEEQDAQVGKGSRGDVTILPTLVVNNRQYRGKLEKGAVMKAICAGFEETTEPAVCLSSDVETNECLQNNGGCWQDKAANITACKDTFRGRVCECPMVDGVQFKGDGYTTCEASGPGRCKINNGGCWHETLNRHAFSACLDNGGVKCQCPAGFKGDGVKNCEDIDECKEKKACQCPECSCKNTWGSYECTCSGDLLYIRDHDTCISKTASQEGKSAWAVFWVILIGLVVAAAGAYLVYKYRIRSYMDSEIRAIMAQYMPLDSQAEVVNHVDEERA 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0519 628 CDD PA_VSR 50 177 - -
Ssu7g0519 628 ProSitePatterns EGF-like domain signature 2. 500 514 IPR000742 -
Ssu7g0519 628 Pfam PA domain 61 163 IPR003137 -
Ssu7g0519 628 Gene3D Laminin 467 520 - -
Ssu7g0519 628 MobiDBLite consensus disorder prediction 347 366 - -
Ssu7g0519 628 CDD EGF_CA 516 544 - -
Ssu7g0519 628 Gene3D Laminin 521 557 - -
Ssu7g0519 628 SUPERFAMILY PA domain 30 153 IPR046450 -
Ssu7g0519 628 Gene3D Laminin 409 465 - -
Ssu7g0519 628 MobiDBLite consensus disorder prediction 347 363 - -
Ssu7g0519 628 ProSitePatterns Calcium-binding EGF-like domain signature. 516 542 IPR018097 GO:0005509
Ssu7g0519 628 Gene3D - 22 186 - -
Ssu7g0519 628 PANTHER VACUOLAR-SORTING RECEPTOR-LIKE PROTEIN 15 607 - -
Ssu7g0519 628 SMART egfca_6 516 558 IPR001881 GO:0005509
Ssu7g0519 628 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 15 607 - -
Ssu7g0519 628 Pfam Complement Clr-like EGF-like 499 519 IPR026823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0519 Ssu-Chr7 9546213 9551262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0519 23 628 Miscellaneous Gene Families AT2G14740 83.828 0.0 1091
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0519 - - gmx:100803958 1229.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0519 7 9546213 9551262 Ssu7g0519 7 9546213 9551262 ECH
Ssu2g3160 2 93871258 93875005 Ssu7g0519 7 9546213 9551262 PCT