Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g3160 ATGGGTCGATTCGTGGTGGAGAAGAACAGCCTGAGAGTGACGTCGCCGGAGAAAATAAGAGGCACACAGGATAGTGCCATTGGCAACTTCGGGATACCTCAATACGGTGGTAGCATGGCGGGGAACGTCGTTTACCCAAAGGATAACAAAAAAGGTTGTAAAGAGTTTGATGACTATGGGATTTCCTTCAAATCACGCCCCGGTGCTCTTCCCACCATTGTCTTACTCAATCGCGGAAGTTGCTTCTTTGCTTTGAAGGTCTGGAATGCCCAGAAGGCTGGAGCTTCTGCTGTTCTTGTTGCAGATGATATTGAGGAGCCCTTAATAACTATGGACACGCCTGAAGAGGATGGGTCATCTGCCAAATATGTGGAGAATATAACTATACCGTCTGCTCTCGTTGGAAAAAGTTTTGGTGAAAAATTAAAGGATGCCATAAGTGCTGGGGACATGGTCAATGTAAACCTTGATTGGAGGGAGGCTGTTCCACACCCAGATGACCGTGTGGAGTATGAGTTGTGGACCAACAGCAATGATGAGTGTGGAGTTAAGTGTGATATGTTGATGGAATTTGTGAAGGATTTCAAGGGTGCAGCACAGATACTAGAGAAAGGCGGTTACACTCAGTTTACACCCCATTATATAACTTGGTACTGTCCTCATGCGTTCACATTGAGCAAACAGTGCAAGTCTCAATGCATAAATCATGGAAGATATTGCGCTCCGGATCCTGAGCAGGACTTCAGCACAGGTTATGATGGGAAAGATGTggttattgaaaatttaaggCAGCTATGTGTTTTCAAGGTGGCAAATGAAACTGAAAAGCCTTGGGTGTGGTGGGACTATGTCACTGATTTTCAAATTAGATGCCCAATGAAGGAGAAGAAGTACAATAAGGAATGTGCAAATGCTGTAATTAAATCACTGGGGCTTAATATTGAAAAGATTGAAAAGTGCATGGGAGATCCAGATGCCGATACTGAAAATCCTGTTTTGAAAGAAGAGCAAGATGCCCAAaTTGGAAAGGGATCACGAGGTGATGTTACCATATTGCCTACTCTTGTTGTCAATAATCGACAATATCGAGGAAAATTGGAGAAAGGTGCTGTTCTAAAGGCTATATGTTCTGGGTTTGAGGAAACTACTGAACCAGCTGTTTGCTTGAGCAGTGATGTGGAGTCAAATGAGTGCTTGACAAACAATGGTGGTTGTTGGCAGGATAAAGCAGCTAACATCACTGCATGCAAGGATACATTTCGAGGGCGAGTATGTGAATGCCCTTTGGTTGATGGTGTACAATTCAAAGGAGATGGTTATACAACTTGTGAagCCAGTGGACTTGGGCGTTGCAAGATAAACAATGGAGGCTGTTGGCACAATGCCCGGAGTGGACATGCATTTTCTGCTTGTTTGGATAGTGGAGGGGTCAAATGCCAGTGTCCCACAGGATTTAGAGGTGATGGTGTCAAAAATTGTGAAGATATTGATGAATGCAAAGAGAGGAGGGCTTGTCAGTGCCCTGAATGCAGCTGTAGGAATACTTGGGGCAGCTATGACTGCAGTTGTAGTGGAGATCTTCTGTATATGAAGGACCATGATACCTGCATAAGTAAAACTGGCAGTCAGGGAAGATCTACTTGGGCTGCTTTTTGGTTGATTTTACTTGGCGTCATTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTATAGAATAAGGCAATACATGGATTCTGAAATCAGAGCAATCATGGCACAATATATGCCCTTGGACAGCCAAGCAGAAGTTCCAAATCATGTCAATGATCAAAGAGCATGA 1821 0.436 MGRFVVEKNSLRVTSPEKIRGTQDSAIGNFGIPQYGGSMAGNVVYPKDNKKGCKEFDDYGISFKSRPGALPTIVLLNRGSCFFALKVWNAQKAGASAVLVADDIEEPLITMDTPEEDGSSAKYVENITIPSALVGKSFGEKLKDAISAGDMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGYTQFTPHYITWYCPHAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVIENLRQLCVFKVANETEKPWVWWDYVTDFQIRCPMKEKKYNKECANAVIKSLGLNIEKIEKCMGDPDADTENPVLKEEQDAQIGKGSRGDVTILPTLVVNNRQYRGKLEKGAVLKAICSGFEETTEPAVCLSSDVESNECLTNNGGCWQDKAANITACKDTFRGRVCECPLVDGVQFKGDGYTTCEASGLGRCKINNGGCWHNARSGHAFSACLDSGGVKCQCPTGFRGDGVKNCEDIDECKERRACQCPECSCRNTWGSYDCSCSGDLLYMKDHDTCISKTGSQGRSTWAAFWLILLGVIMIAGGAFLVYKYRIRQYMDSEIRAIMAQYMPLDSQAEVPNHVNDQRA 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g3160 606 ProSitePatterns Calcium-binding EGF-like domain signature. 495 521 IPR018097 GO:0005509
Ssu2g3160 606 PANTHER VACUOLAR-SORTING RECEPTOR-LIKE PROTEIN 1 585 - -
Ssu2g3160 606 Gene3D - 1 165 - -
Ssu2g3160 606 SUPERFAMILY PA domain 33 127 IPR046450 -
Ssu2g3160 606 Pfam PA domain 40 142 IPR003137 -
Ssu2g3160 606 Gene3D Laminin 388 444 - -
Ssu2g3160 606 Gene3D Laminin 449 499 - -
Ssu2g3160 606 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 585 - -
Ssu2g3160 606 CDD PA_VSR 29 156 - -
Ssu2g3160 606 Pfam Complement Clr-like EGF-like 478 498 IPR026823 -
Ssu2g3160 606 CDD EGF_CA 495 523 - -
Ssu2g3160 606 SMART egfca_6 495 537 IPR001881 GO:0005509
Ssu2g3160 606 Gene3D Laminin 500 537 - -
Ssu2g3160 606 ProSitePatterns EGF-like domain signature 2. 479 493 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g3160 Ssu-Chr2 93871258 93875005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g3160 2 606 Miscellaneous Gene Families AT2G14740 84.463 0.0 1103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g3160 - - gmx:100820115 1244.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g3160 2 93871258 93875005 Ssu2g3160 2 93871258 93875005 ECH
Ssu2g3160 2 93871258 93875005 Ssu7g0519 7 9546213 9551262 PCT