Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0111 ATGGGAACTCTCAGCGGCGACGAGGAGGATCTCAACGCGGAGATTGCGGAGGTGCGCGCCTGCCTCGTGAACGAAGAGAACGAGCTCGGTGAGACTCCTCTGTTCACGGCCGCTGAAAAGGGGCACCTGGATGTGGTGAAGGAATTGCTGAACCATTCCACCGCTGACACTGTTTCCAAGAAGAACCGATCCGGCTTTGATGCGTTGCATATTGCTGCTAGTCAAGGCCACCACCCCATTGTTCAGGTTTTGCTAGATTATGACCCGGGATTGAGCAAAACTATTGGTCCGTCCAATTCCACTCCGCTTATAACTGCGGCGACGAGAGGTCACATGGAAGTGGTGAATGAGCTGCTGTCGAAGGATTGTAGCTTGTTGGAGATTGCTAGATCCAATGGCAAAAACGCATTGCATTTAGCAGCTCGTCAGGGTCATGTGGAGATTGTCAAAGCCTTGCTCAGTAAAGATCCACAGTTGGCTCGAAGGACTGACAAGAAAGGGCAAACTGCATTGCATATGGCGGTAAAAGGGCAAAGTTGTGATGTGGTGAAATTGCTTCTTGAGGCGGATGCTGCTATTGTTATGCTTCCTGACAAATTTGGTAACACAGCATTACATGTGGCAACCAGGAAAAAGCGAGTAGAGATAGTGAATGAGTTATTAAATCTGCCAGACACCAATGTTAATGCATTAACCAGAGACCACAAAACAGCTCTCGACATTGCTGAAAATCTTCCCCTCTCTGAAGAGGCATCGGATATAAAGGACTGTCTTTCTCGGTATGGGGCACTTAGAGCTAACGAGCTCAACCAACCAAGGGACGAATTGAGGAAAACTGTTactcaaataaagaaagatgtTCACACTCAACTTGAACAAACCAAGAGAACCAACAAAAATGTTCACAATATTTCAAAAGAGCTAAGGAAACTCCACAGGGAAGGAATTAACAATGCCACAAACTCAGTGACAGTGGTGGCTGTGTTGTTTGCTACAGTTGCTTTTGCTGCTATATTCACTGTGCCTGGTGGGGATAACAATAACGGCTCAGCAGTGGTAGCAGCTTATGCGACTTTTAAAATCTTCTTCATCTTTAATGCTattgcactttttacatctttGGCTGTTGTGGTTGTTCAAATTACCTTGGTTAGAGGTGAAACTAAAGCAGAGAAAAGGGTGGTAGAGGTGATCAACAAGCTGATGTGGTTGGCGTCTGTCTGCACTTCAGTGGCATTTATTGCCTCTTCTTACATAGTTGTGGGTAGGAAGAATGAGTGGGCTGCAATTCTGGTTACATTAGTTGGAGGGGTGATAATATCTGGAGTTATTGGCACTATGACATACTATGTAGTGAGGTCTAAGAGAAGCAGGTCAATGAGGAAAAAGGAGAAGCAGCTAGCCAAGAGGAGTGGATCTAACTCATGGCATCATTCTGAATTCTCCAATTCTGAGGTTGATCGAATTTATGCGCTTTGA 1479 0.4469 MGTLSGDEEDLNAEIAEVRACLVNEENELGETPLFTAAEKGHLDVVKELLNHSTADTVSKKNRSGFDALHIAASQGHHPIVQVLLDYDPGLSKTIGPSNSTPLITAATRGHMEVVNELLSKDCSLLEIARSNGKNALHLAARQGHVEIVKALLSKDPQLARRTDKKGQTALHMAVKGQSCDVVKLLLEADAAIVMLPDKFGNTALHVATRKKRVEIVNELLNLPDTNVNALTRDHKTALDIAENLPLSEEASDIKDCLSRYGALRANELNQPRDELRKTVTQIKKDVHTQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNNNGSAVVAAYATFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRKNEWAAILVTLVGGVIISGVIGTMTYYVVRSKRSRSMRKKEKQLAKRSGSNSWHHSEFSNSEVDRIYAL 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0111 492 Gene3D - 5 127 IPR036770 -
Ssu7g0111 492 PANTHER ANKYRIN REPEAT PLANT-LIKE PROTEIN 12 486 - -
Ssu7g0111 492 SMART ANK_2a 200 230 IPR002110 GO:0005515
Ssu7g0111 492 SMART ANK_2a 98 127 IPR002110 GO:0005515
Ssu7g0111 492 SMART ANK_2a 166 195 IPR002110 GO:0005515
Ssu7g0111 492 SMART ANK_2a 64 93 IPR002110 GO:0005515
Ssu7g0111 492 SMART ANK_2a 132 161 IPR002110 GO:0005515
Ssu7g0111 492 SMART ANK_2a 29 60 IPR002110 GO:0005515
Ssu7g0111 492 Pfam Domain of unknown function 314 420 IPR026961 -
Ssu7g0111 492 Coils Coil 8 28 - -
Ssu7g0111 492 Pfam Ankyrin repeats (3 copies) 99 157 IPR002110 GO:0005515
Ssu7g0111 492 Pfam Ankyrin repeats (3 copies) 164 229 IPR002110 GO:0005515
Ssu7g0111 492 Pfam Ankyrin repeats (3 copies) 27 90 IPR002110 GO:0005515
Ssu7g0111 492 ProSiteProfiles Ankyrin repeat profile. 64 86 IPR002110 GO:0005515
Ssu7g0111 492 ProSiteProfiles Ankyrin repeat profile. 29 61 IPR002110 GO:0005515
Ssu7g0111 492 Gene3D - 128 271 IPR036770 -
Ssu7g0111 492 ProSiteProfiles Ankyrin repeat profile. 132 164 IPR002110 GO:0005515
Ssu7g0111 492 PANTHER CASKIN 12 486 - -
Ssu7g0111 492 ProSiteProfiles Ankyrin repeat profile. 166 198 IPR002110 GO:0005515
Ssu7g0111 492 ProSiteProfiles Ankyrin repeat region circular profile. 166 193 - -
Ssu7g0111 492 ProSiteProfiles Ankyrin repeat region circular profile. 29 53 - -
Ssu7g0111 492 ProSiteProfiles Ankyrin repeat region circular profile. 132 155 - -
Ssu7g0111 492 ProSiteProfiles Ankyrin repeat region circular profile. 64 86 - -
Ssu7g0111 492 SUPERFAMILY Ankyrin repeat 21 246 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0111 Ssu-Chr7 2027404 2030256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0111 2 492 Miscellaneous Gene Families AT3G12360 81.874 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0111 - - gmx:100777929 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0111 7 2027404 2030256 Ssu4g1094 4 17366192 17368946 ECH
Ssu7g0111 7 2027404 2030256 Ssu7g0111 7 2027404 2030256 ECH