Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1094 ATGATGAAGAAACAATTGACAGGTATACGGGGTGATTCTCCCCTACAATCAGCAATCCGAGCTGGAAATTTAGAATTGGTTCTGGAAATCATCTCTCAGAGTCCAGAGGAAGAATTAAAGGAGttgctttcaaagaaaaataactcTTCTGAAACTGCCTTATATGTTGCTGCTGAAAGTGGTCATCTTGATATAGTGAAGGAATTGATTAGATACCATGATATTGGGTTGGCCAGCTTCAAAGCTAGAAATGGATTCGATGCATTCCACATTGCTGCTAAAAATGGACACTTGGAGATATTGAAGGTCCTCATGGAGGCCATTCCTGAAATTTCAATGACTGTTGATTTGTCAAACACTACTGCATTGCATACTGCTGCAGCGCAAGGACATATTGAGGTAGTAAGTTTTCTCTTGGAGAAAGGTAGCAGCCTGGTAACTATTGCGAAAAGCAATGGGAAAACTGTGTTGCATTCTGCTGCAAGAAATGGCCACGTGGAGGTCGTCAAGGCCCTTCTTAGCAAAGAACCTGAAATTGCAACGAGAATCGATAAGAAGGGGCAGACAGCACTCCATATGGCAGTTAAAGGACAGAATCTTGAGTTGGTGGATGAGCTTGTTAAACTGAATTCATCCTTGGGTAATATGGTGGATGCCAAGGGAAACACTGCACTACATATAGCAACCCGGAAGGGGCGTCAACagGTTGTTCAGAAGCTACTAAATTGCAGAGAAATAGACACAGATGTTATTAACAAATCTGGAGAAACTGCTTTAGATACTGCAGAGAAAAATGGTCGCTTGGACATTGCCAACTTTCTGCAGCAGCATGGAGCTCAAAGTGCCAAGTCGATCAAGTCACCTACTACAAACACGGCCCTTGAACTCAAACGAACAGTGAGTGACATAAAAAGTGGGGTTCATAACCAGCTGGAACACACAATTAAAACACAAAGACGTATGCAAGGTATAGCAAAGCGAATTAACAAAATGCACGCCGAGGGGCTTAACAATGCAATCAACTCCAACACTCTTGTTGCTGTCCTTATTGCAACAGTTGCTTTTGCTGCCATATTTAATGTTCCAGGCCAGTATCCTCAGAATCAAAGTCAACTCTCTCCTGGAATGTCTCCTGGGGAAGCTTATATAGCTCCTGATATTGGATTCATGATATTCATAATCTTTGATTCTACTGCCCTCTTCGTATCATTGGCTGTTGTGGTTGTCCAAACATCAGTGGTTGTTATTGAGAGGAAAACGAAGAGACAAATGATGGCAGTTATCAATAAGTTGATGTGGCTAGCCTGTGTGCTAATTTCTGTGGCATTTATTGCAATGTCATACATAATTGTTGGGGTTCAAAAAGAGTTGGCTATAGCAGCCACAGCTCTAGGAACAGTGATTATGGCAGCTACTTTAGGAACACTCTGTTATTGGGTGATTGCTCACCGCCGTGAGGCCTCAAGATTGCGAAGTCTTAGGACAACAATGAGCAGTAGGCAGTCAATGTCTATGTCAATGATGTCAGGTTCAGAGAATGAGTATAAGACAGTGTACGCTATATAA 1566 0.417 MMKKQLTGIRGDSPLQSAIRAGNLELVLEIISQSPEEELKELLSKKNNSSETALYVAAESGHLDIVKELIRYHDIGLASFKARNGFDAFHIAAKNGHLEILKVLMEAIPEISMTVDLSNTTALHTAAAQGHIEVVSFLLEKGSSLVTIAKSNGKTVLHSAARNGHVEVVKALLSKEPEIATRIDKKGQTALHMAVKGQNLELVDELVKLNSSLGNMVDAKGNTALHIATRKGRQQVVQKLLNCREIDTDVINKSGETALDTAEKNGRLDIANFLQQHGAQSAKSIKSPTTNTALELKRTVSDIKSGVHNQLEHTIKTQRRMQGIAKRINKMHAEGLNNAINSNTLVAVLIATVAFAAIFNVPGQYPQNQSQLSPGMSPGEAYIAPDIGFMIFIIFDSTALFVSLAVVVVQTSVVVIERKTKRQMMAVINKLMWLACVLISVAFIAMSYIIVGVQKELAIAATALGTVIMAATLGTLCYWVIAHRREASRLRSLRTTMSSRQSMSMSMMSGSENEYKTVYAI 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1094 521 Pfam Ankyrin repeats (3 copies) 10 75 IPR002110 GO:0005515
Ssu4g1094 521 Pfam Ankyrin repeats (3 copies) 217 280 IPR002110 GO:0005515
Ssu4g1094 521 Pfam Ankyrin repeats (3 copies) 152 210 IPR002110 GO:0005515
Ssu4g1094 521 Pfam Ankyrin repeats (3 copies) 81 145 IPR002110 GO:0005515
Ssu4g1094 521 PANTHER ANKYRIN REPEAT PLANT PROTEIN 1 521 - -
Ssu4g1094 521 ProSiteProfiles Ankyrin repeat profile. 84 116 IPR002110 GO:0005515
Ssu4g1094 521 ProSiteProfiles Ankyrin repeat region circular profile. 84 106 - -
Ssu4g1094 521 ProSiteProfiles Ankyrin repeat profile. 152 184 IPR002110 GO:0005515
Ssu4g1094 521 ProSiteProfiles Ankyrin repeat profile. 220 242 IPR002110 GO:0005515
Ssu4g1094 521 SUPERFAMILY Ankyrin repeat 14 279 IPR036770 -
Ssu4g1094 521 Gene3D - 111 283 IPR036770 -
Ssu4g1094 521 ProSiteProfiles Ankyrin repeat region circular profile. 186 213 - -
Ssu4g1094 521 ProSiteProfiles Ankyrin repeat profile. 186 218 IPR002110 GO:0005515
Ssu4g1094 521 ProSiteProfiles Ankyrin repeat region circular profile. 220 242 - -
Ssu4g1094 521 ProSiteProfiles Ankyrin repeat region circular profile. 152 179 - -
Ssu4g1094 521 ProSiteProfiles Ankyrin repeat region circular profile. 118 145 - -
Ssu4g1094 521 ProSiteProfiles Ankyrin repeat profile. 118 150 IPR002110 GO:0005515
Ssu4g1094 521 SMART ANK_2a 10 41 IPR002110 GO:0005515
Ssu4g1094 521 SMART ANK_2a 254 283 IPR002110 GO:0005515
Ssu4g1094 521 SMART ANK_2a 49 77 IPR002110 GO:0005515
Ssu4g1094 521 SMART ANK_2a 84 113 IPR002110 GO:0005515
Ssu4g1094 521 SMART ANK_2a 152 181 IPR002110 GO:0005515
Ssu4g1094 521 SMART ANK_2a 118 148 IPR002110 GO:0005515
Ssu4g1094 521 SMART ANK_2a 220 250 IPR002110 GO:0005515
Ssu4g1094 521 SMART ANK_2a 186 215 IPR002110 GO:0005515
Ssu4g1094 521 Gene3D - 5 110 IPR036770 -
Ssu4g1094 521 Pfam Domain of unknown function 334 449 IPR026961 -
Ssu4g1094 521 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 1 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1094 Ssu-Chr4 17366192 17368946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1094 2 521 Miscellaneous Gene Families AT1G07710 64.068 0.0 618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1094 - - gmx:100802370 870.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0111 7 2027404 2030256 Ssu4g1094 4 17366192 17368946 ECH
Ssu4g1094 4 17366192 17368946 Ssu4g1094 4 17366192 17368946 ECH