Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3623 ATGGAGAATCAGCTACATAGCATCTCATCTGATATAGGTGTGAAGATGGGAGTGGCAGCTGAGTCAAGCGACGACATCCCGCTGTTACTCACCCAATCTCTCCCTCTCAAAAGGACAGggacGGTGTGGACAGCAGTGGCACACATAGTGACAGGGGTGATAGGATCTGGAGTGCTGTCTCTGCCATGGAGCATTGCACAGCTTGGGTGGCTTGCAGGCCTATTCTCCATCCTTCTCATTGCTGCCTccactctcttctcttcttttcttctatgCAACACTTATCGTCATCCCCATCCTGAATACGGTCCTCACAGGAGTGCCTCCTACCTTGATGTTGTCAATTTGCATTTAGGAATAAGTAATGGACGGCTCAGTGGCCTTCTTGTGAATATATGTTTGTATGGTTTTGGAATTGCCTTCGTCATTACAACAGCTATCAGCTTAAGAACAATCCAAAATTCATTTTGTTACCGGTACAAAGGAAGTGAAGCAGCATGTGAATCTGTAGATGTATATTATATGCTGCTTTTTGGGGCTATCCAAATTGTTCTTTCACAGATACCCAACTTCCATAACATCAAATGGTTGTCGGTTGTTGCTGCAATTATGTCCTTTACTTATTCTTTCATAGGAATGGGGCTTTCCATTGCACAAATCATAGAAAAAGGACATGCTGAGGGTAGCATTGGAGGAATCAGTACCTCCAATGGAACTGAAAAGTTATGGCTGGTTTCTCAAGCACTTGGTGACATATCATTCTCATATCCATTCTCAACAATTATTATGGAAATACAGGATACTTTGAAATCGCCTCCACCAGAAAACCAAACCATGAAGAAGGCCTCAGTAATTGCGATCACTGTCACAACATTCTTGTACCTCAGCTGTGGAGGTGCTGGATATGCTGCCTTTGGTGATAATACACCTGGAAACCTTTTAACAGGGTTCGGGTCCTCTAAGTCTTATTGGCTTGTGAACTTTGCTAACGCTTGTATAGTGGTTCACCTAGTTGGTTCATATCAgGTGTATAGCCAGCCACTTTTTGCCACTGTTGAGAATTGGTTCCGTTTTAAATTCCCAGATAGTGAATTTGTGAATCACACATATATCTTAAAACTCCCGTTGCTGCCAGCCTTTGAACTTAATTTTCTCAGCCTGTCTTTCAGAACTGCTTATGTTGCATCAACAACTGTGATTGCAATGATCTTTCCCTACTTCAATCAGATGTTGGGAGTTTTGGGTAGCTTAAGTTTTTGGCCGTTAACCATATACTTTCCAGTGGAAATTTACTTGAGTCACTCCAGTACTGAAGCGTGGACGGCTAAGTGGGTCCTGCTTCGGACTTTCAGCATTTTTGGCTTTGTGTTTGGACTGTTCACTCTCATTGGATGCATTAAAGGAATAGTAACTGAAAAAATAAGCTGA 1428 0.416 MENQLHSISSDIGVKMGVAAESSDDIPLLLTQSLPLKRTGTVWTAVAHIVTGVIGSGVLSLPWSIAQLGWLAGLFSILLIAASTLFSSFLLCNTYRHPHPEYGPHRSASYLDVVNLHLGISNGRLSGLLVNICLYGFGIAFVITTAISLRTIQNSFCYRYKGSEAACESVDVYYMLLFGAIQIVLSQIPNFHNIKWLSVVAAIMSFTYSFIGMGLSIAQIIEKGHAEGSIGGISTSNGTEKLWLVSQALGDISFSYPFSTIIMEIQDTLKSPPPENQTMKKASVIAITVTTFLYLSCGGAGYAAFGDNTPGNLLTGFGSSKSYWLVNFANACIVVHLVGSYQVYSQPLFATVENWFRFKFPDSEFVNHTYILKLPLLPAFELNFLSLSFRTAYVASTTVIAMIFPYFNQMLGVLGSLSFWPLTIYFPVEIYLSHSSTEAWTAKWVLLRTFSIFGFVFGLFTLIGCIKGIVTEKIS 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3623 475 PANTHER AMINO ACID TRANSPORTER, TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN-RELATED 17 474 - -
Ssu6g3623 475 PANTHER OS05G0424000 PROTEIN-RELATED 17 474 - -
Ssu6g3623 475 Pfam Transmembrane amino acid transporter protein 38 469 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3623 Ssu-Chr6 79933488 79936120 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3623 36 472 Organic Solute Cotransporters AT5G09220 46.818 4.38e-146 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3623 K24917 - gmx:100788056 864.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3623 6 79933488 79936120 Ssu6g3623 6 79933488 79936120 ECH
Ssu9g1139 9 43267355 43271143 Ssu6g3623 6 79933488 79936120 PCT