Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3582 ATGGTGGCTAAAATCAGGCAAAGTGTTGCTAACTCtccaaatccaacaaaaccAGGAGCGATTGGAGAGATTGACACCAGTCCACCTTTTCAATCTGTTAAAGATGCTGTTTCTCTATTTGGTGAAGGTGCTTTCTCTGGTGAAAAACCTGAAATTAAGAAGGCAAAACCTTATTTTGCTGagAGTGTTTGGGCAAAGGAGAGACAACTTCACTTAGCCCAGAAAGAGctgaaaaaattaaaggaacaaCTAAAGAATGCAGAAACTACCAAGGCTCAAGTCCTGGTGGAGCTTGAAAAGGCTAAAAGAGTGGTTGAGGATCTGACACAAAAGCATAAAGTTCTCAGTGAGTCCAGAGAATCAGCAATACAGGCAACAGAAGCTTCAAAAAGTCAAGCAAAAcagcttaaagaagaaaattgtgGCAATCTTGATGGAACCGATGGTGCTTGGAAAGAAGAGTTAGAAACTGCCGTTAAAAGTTATGCATCTGTCATTACAGAACTTGATGTTGCAAAACAAGAACTGAGTAAAATTCGTCAGGGGTATGATTTATCCTTGGAAGCAAGAGTTTCTGCTCTCAAGCAAGCAGCAGAAGCTGAAGATGCAGTGAAGGTGAACACCGAAAGAGCATCTGAGCTATCTAAAGAAATTTTGGCTGTACAGGAATCAATTGAGCAAATGAATGCTGCATCTGTCCAAGCACATCAACCGCAAGAAGAGATATTAGCCGAGCAAAACGTTCTAAGACAAACATATGAAGCCAACCTTGAAGAATCAAAAAAGAAGTTGCATGATTTAAAGAAGGAATTCAATCCAGAGCTTACCAAAGATCTCGAAGGGCAGCTGACTGAGACAATGAATGAAATTGGGGCTCTGCAAAAGCaaatggaaaatgaaaagaCATCAGACTTGGACTCTTTGAGAAGTGTCACTCTGGAGCTTGATGATGCTAAGGAATCACTGCAGAAAGTAGCAGAACAGGAAGACTTGCTTAGAAGCTTGGTGGAAGCTCTTAGGATGGAGCTGGAGAGTGTAAAAAGAGAACACTCTGAATTGAAGGAGAAAGAATCCAAAATCGAATCCATTGTTGAGGATCTGCGGGTAGAGCTCCAGAAAAGTGAGTCTGAACTTGAAACCTACTTGGCAGAAGAATTTAAAGCTAGAGGTGCATCAGAGGAAATGGTCTTGACATTGAACCAGTTGTTGTCTGAAACTGAAAATGCAAGGAGAGAAACAGAAGATATGAAGAATGAGGCAGAAGAATTGAAGATGGAAGCTGCAGTCACTAAACTTGTGTTAGAAGATGCAGAAATAAAGCTTAAAGTAGCATTGGAAGAGGCAGAAGCAGCTAAAGCAGCAGAGGCAAATGCTATTGATCAGGTTAGGGTGTTATCTGTGAAGACTAGTGCTGCTTGTTCATCAACTTCTGAATCTGGTGCAAAAATTACAATCTCAAGGGAGGAGTTCAAATCCTTAATTCGTAAGGTTGAGGAGTCTGATAAATTAGCAGACATGAAAGTGGCTGCTGCCACAGCACAGATTGAAGCTGCAAAGGCTAGTGAAAATGAAGTTCTGACAAGGTTAGAGGAAACTCAGAAGGAAATTGAGGATATAAAGACTGAAACACAGGAAGCCTTGAAAAGGGCTGACATGGCTGATGCAGCAAAGAGGGCAGTGGAGAGTGAGCTCAGAAAGTGGCGCGAACGCGAGCAGAAGAAAGCAGCCGAAGCTGCAGCTCGAATATTGGCTGAAACACAGATGTCACCAGAACTATCTCCTCAGCACTACAGGATTCAAAAGCAGAATTCACTTCCAAAGAAGGTGGAGATGAGGAAGTTAGAAAAAGGGAAGGTGTCAGTTTCAAACAAAGTTCTCTTGCCTAATATCAGTGGCATCTTTCACAGGAAAAAGAACCAGGTTGAGGGAGGATCTCCTTCTTAG 1944 0.4059 MVAKIRQSVANSPNPTKPGAIGEIDTSPPFQSVKDAVSLFGEGAFSGEKPEIKKAKPYFAESVWAKERQLHLAQKELKKLKEQLKNAETTKAQVLVELEKAKRVVEDLTQKHKVLSESRESAIQATEASKSQAKQLKEENCGNLDGTDGAWKEELETAVKSYASVITELDVAKQELSKIRQGYDLSLEARVSALKQAAEAEDAVKVNTERASELSKEILAVQESIEQMNAASVQAHQPQEEILAEQNVLRQTYEANLEESKKKLHDLKKEFNPELTKDLEGQLTETMNEIGALQKQMENEKTSDLDSLRSVTLELDDAKESLQKVAEQEDLLRSLVEALRMELESVKREHSELKEKESKIESIVEDLRVELQKSESELETYLAEEFKARGASEEMVLTLNQLLSETENARRETEDMKNEAEELKMEAAVTKLVLEDAEIKLKVALEEAEAAKAAEANAIDQVRVLSVKTSAACSSTSESGAKITISREEFKSLIRKVEESDKLADMKVAAATAQIEAAKASENEVLTRLEETQKEIEDIKTETQEALKRADMADAAKRAVESELRKWREREQKKAAEAAARILAETQMSPELSPQHYRIQKQNSLPKKVEMRKLEKGKVSVSNKVLLPNISGIFHRKKNQVEGGSPS 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3582 647 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED 4 632 - -
Ssu6g3582 647 Coils Coil 243 270 - -
Ssu6g3582 647 Coils Coil 308 384 - -
Ssu6g3582 647 Coils Coil 63 139 - -
Ssu6g3582 647 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 4 632 - -
Ssu6g3582 647 Coils Coil 515 549 - -
Ssu6g3582 647 Coils Coil 399 454 - -
Ssu6g3582 647 Pfam Weak chloroplast movement under blue light 23 573 IPR008545 -
Ssu6g3582 647 Coils Coil 276 303 - -
Ssu6g3582 647 Coils Coil 197 231 - -
Ssu6g3582 647 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3582 Ssu-Chr6 79448961 79451562 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3582 - - gmx:100817643 890.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3582 6 79448961 79451562 Ssu6g3582 6 79448961 79451562 ECH
Ssu9g1100 9 42607980 42611464 Ssu6g3582 6 79448961 79451562 PCT