Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3580 ATGCGAGAGAGAATGGGAGAGGAAGGTGTGGGATTAGAGAAGTCCCATGTTGGTTTGTTCGAGACAAAAGAAGCAAGATTCCGAGGAGTTTACAAGGTCTTTGCGTCCACAATATTTGCAGCTATCGGTTTGATTTGGGTGTACAGAGTGGCAAACATCACGACAGTTACAGCTGGGCCTGGGAGGTGGGCTTGGATTAGTGTATTGGTGTCAGAGTTGGCTTTTGGATTCTACTGGATCATCACTCAGTCTGTTCGTTGGAGAATCGTCTATCAAACGCCCTTCAAACACAGGCTCTCACACAGATATGATGAGGAGAATTTACCAGTAGTGGACATTTTTGTGTGCACTGCTGACCCAATACTAGAGCCTCCATGCATGGTGATTAACACGGTATTATCAGCGATGGCATACAATTATCCTACGAATAGATTGAATGTGTATCTCTCTGACGATGGAAGCTCAGAGCTAACATTCTATGCTCTCTTAAAGGCCTCCATTTTCTCGAAACATTGGTTGCCATTCTGTAGAAGATTCAATGTTGAACCCAGGTCCCCGGAGGCATACTTTGCCGCTCAAAATTGTAGCAGTAGTAGCACAGAACATGGCCAAGCATGGTTATTTATTAAGAAATTGTACGAAGACATGAAAACTGAGATTGAATCAGCCGTAGCAAGGGGCAAGATTCCGGAGAATATGAGGAATCAGCACAGAGGATTCTCGGAATGGAATCCGAAAACAACAAAGCAGGATCATCAGCCTATCGTGCAGATGATAATCGATGGAAGGGACACGGATGCTGTAGATGAAGACGGATTGCAACTGCCAACAGTCGTATACCTGTCACGCGAGAAACGACTCAACTACCCTCACCACTTCAAAGCAGGAGCTATTAATGCACTGATTAGAGTGTCGTCCGAGATAAGCAACGCCCCTTTCATCCTCAACTTGGATTGCGATATGTACTCAAATAATGCAGATACAATTAAAGAAATACTATGCTTTTTCCTGGATGAAACAAAGGGCCACGATATAGCTTATGTACAATTTCCACAGTGCTATAATAACATCACCAAACATGACCATTATGGAAATTCTTACGTTGTGACCAGTAAGTTTGAGCAAGCTGGCATATGTGGATATGGAGCAGCCTTGTATTGTGGAACTGGGTGTTTACATCGAAGAGAAAGTTTGTCAGGAGCTTACTTGAGAGATTACAAAGCAAAATGGGACATCAAGTCTAAAAGATCAAACGATAACAACAGAACAGTTGATGAATTGAATGAAGCATCCAAGGCTCTTGCCACTTGCACCTATGAGGAGGGCACTCAATGGGGGAAGGAGATGGGATTAGTGTATGGTATTCCTGTGGAAGACATTGCTACTGGCCTAGCAATCTCATGCAGGGGTTGGAAATCGATTTATTACAACCCGGAAAGGAAGGCTTTCTTGGGTATAGCTCCAACAACCTTGGATGTGGTCTGTGTACAGCATAAGAGGTGGTCAGAAGGCATGTTCCAGGTTTTCTTCTCTAAGTATTGCCCTTTCATTTATGGGCATGGGAAGATACACTTTGGTGTACAAATGGGATATTGCATTTACCTCTTATGGGCTCCTATGTCCCTGCCCATTCTCTGTTATGCCATTGTTCCTCCTATTTGCTTGCTTCATGGCATTCCATTGTTCCCACAGCTTTCAAGCATTTGGGTCCTTCCATTTGCCTATGCATTTCTTGCTACCTATGGCTACAGCTTGTGTGAGTATATGAGTTGTGGGTACACAGCAAAGGGTTGGTGGAACTTGCAAAGAATTAAGTTCATCCATAGGTCCACCTCGTATCTCTTTGGTTTCATTGACACCGTGACCAAGCAATTAGGACTATCACAGACAAACTTTGCCATCACGGATAAAGTGGTTACTGAGGACGTCCAAAAGAGATATGAGCAAGGGGTCATTGATTTTGGAGGCTCTTCAAATTCAATCATGTTAACCATATTAGCAACAGTGGCATTGCTAAACCTTTTTGGTCTCCTTGGGGGAATCAAGAGGATTCTGATGGATTTGGAATTCAGCTCAAGCCAATTTATGGTGCAGATTACACTGAGTTCATTGGTGGTAATGATCAATTTACCAGTGTATGAGGCACTTTTCATTCGTAGTGATAAAGGCTGCATATCATTCTCGGTTATGGTCAAGTCTATTGTCTTGGCTTCATTGGCCTGTTGCCTAGCACCTTGCATCTGTTAG 2247 0.4339 MRERMGEEGVGLEKSHVGLFETKEARFRGVYKVFASTIFAAIGLIWVYRVANITTVTAGPGRWAWISVLVSELAFGFYWIITQSVRWRIVYQTPFKHRLSHRYDEENLPVVDIFVCTADPILEPPCMVINTVLSAMAYNYPTNRLNVYLSDDGSSELTFYALLKASIFSKHWLPFCRRFNVEPRSPEAYFAAQNCSSSSTEHGQAWLFIKKLYEDMKTEIESAVARGKIPENMRNQHRGFSEWNPKTTKQDHQPIVQMIIDGRDTDAVDEDGLQLPTVVYLSREKRLNYPHHFKAGAINALIRVSSEISNAPFILNLDCDMYSNNADTIKEILCFFLDETKGHDIAYVQFPQCYNNITKHDHYGNSYVVTSKFEQAGICGYGAALYCGTGCLHRRESLSGAYLRDYKAKWDIKSKRSNDNNRTVDELNEASKALATCTYEEGTQWGKEMGLVYGIPVEDIATGLAISCRGWKSIYYNPERKAFLGIAPTTLDVVCVQHKRWSEGMFQVFFSKYCPFIYGHGKIHFGVQMGYCIYLLWAPMSLPILCYAIVPPICLLHGIPLFPQLSSIWVLPFAYAFLATYGYSLCEYMSCGYTAKGWWNLQRIKFIHRSTSYLFGFIDTVTKQLGLSQTNFAITDKVVTEDVQKRYEQGVIDFGGSSNSIMLTILATVALLNLFGLLGGIKRILMDLEFSSSQFMVQITLSSLVVMINLPVYEALFIRSDKGCISFSVMVKSIVLASLACCLAPCIC 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3580 748 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN CSLE 12 743 - -
Ssu6g3580 748 SUPERFAMILY Nucleotide-diphospho-sugar transferases 126 513 IPR029044 -
Ssu6g3580 748 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 246 406 IPR029044 -
Ssu6g3580 748 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 99 204 IPR029044 -
Ssu6g3580 748 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 12 743 - -
Ssu6g3580 748 Pfam Cellulose synthase 422 740 IPR005150 GO:0016020|GO:0016760|GO:0030244
Ssu6g3580 748 Pfam Cellulose synthase 111 400 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3580 Ssu-Chr6 79418107 79432629 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3580 19 744 Glycosyltransferase AT1G55850 47.808 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3580 - - gmx:100779861 1309.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1099 9 42577624 42583436 Ssu6g3580 6 79418107 79432629 PCT