Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3537 ATGAGGCAAAGCATCAATGCAGAAACTGCAGAGGCTCGTTTTTCGGGCACCATTTCCTCCTCATCTCTCAGAAACTTTCTTCCCAGATCACTCTCTTCCAAGCACAAACCCACTCCAAACCCTAAAACCCCAAATTCAGATGCAGAAAACACTCCCCCCACCGATCCCAACATCCAGATCAACCATGGACAATCGTTGCCTTCCACAAACAACCAATCACTCTCCAAAACCTCAATTTCTCAGAACAACCTCAACCAATCGAAACACCCTCTTGAATCCGACCCATCAGTCAAggTTGTAGTGCGAATCAGACCCACCAATAACAATGGAATAGAGGGAGATCGAACCGTTAAGAAGGTTTCTTCTGATACCTTGTGTGTTGGGGATAGGCAATTTACCTTTGATTCAGTTTTTGATTCGAACACCAATCAGGAAGATATTTTTCAGTCAGTGGGTGTCCCCTTGGTTAAAAATGCTTTAGCTGGTTACAACACTTCAATTCTGTCATATGGCCAGTCTGGAAGTGGAAAGACTTACACAATGTGGGGTCCTCCAAGTGCCATGTTTGAGGAGCCCTCGCCCCAAAGTCACAAGGGAATTGTTCCTCGGATCTTCCAAATGTTATTTTCTGAGCTTGAGAGAGAGCAGCATGTGTCTGAGGGGAAACAATTCAACTATCAATGTCGATGTTCTTTCATTGAGATATACAACGAACAAATTGGGGATTTACTTGATCCAACTCAGCGGAACCTTGAGATGAAAGAGGATTCCAAAAATGCATTGTATGCAGAGAATCTGACCGAGGAATATGTCACTAGCTACGATGAAGTGACACAAATTCTGATTAAGGGCCTTTCAAGCAGAAAAGTTGGAGCAACAAGCTTAAATTCTAAGAGCTCTAGATCACAtatcattttcacttttatgaTTGAATCTTGGTGTAAGGGAATATCATCAAATGGTTTCAGTAGTTCAAAATCTAGCAGAATTAGCCTTATTGATCTTGCTGGACCGGACAGGAACAAAGTTGAGGATGCAGGCAAGCAATGTCTAAAGGAaagcaaaaatgtaaaaaagtccTTATCTCAGCTTGGGCACTTAGTAGATGCCCTGACTAAAGAAGCTCACTCAGGAAAAgcagaagaaatttcaaacagGAATTCTTGTTTAACACGTTTACTACAAGAATCACTTGGTGGAAATGCCAAACTCTCCGTAATCTGTTCCATCTCCCCTGATAATAAGAACAATGGTGAAACACTGCGCACACTCAGGTTTGGACAGCGAGTAAGAACCATTAGAAATGAACCTGTTATCAATGAAATAAAGGAGGATGATGTTAATGATTTAAGTGATCAAATCCGGCAACTGAAGGAAGAACTTATTAGAGCAAAGGCAGAGGTTCATAGCTCAGATGGGAGTAAAAATGGATACTTCCAAGTACGTAATGTACGGGACAGCCTTAATCAGTTGCGAGTCAGCTTAAACCGCTCTCTGCTCCTACCTCGCATTGATAACAACACTGATGAAGAGGTCAATGTGGACGAGGAAGACATAAGGCAATTACGCCAGCAGATTGATGAATTGTATCATTCGTGTGAAGGGAATCCTAAAAACATATCTGTCAGTGAAGATTGTGTCCAGTATTATTCTGTTGCAGAAAATTGTGATGCAGATATGaccagtggtgatggtgatgaaaTTGAAAAAGAGGATGTATGTTCTGGAGAAACATTGAGTACGCTTCGTCCCGAGGAAAGTGAGGGATCAACTGCCACCTTGTATACATCAGCAGATGATTTTGCATGCACAGCCAATGCATCAAGGACAATTAAATCTACATTCAGAGATAGCATTTCAGTTAGTTCATGTAGTCAATCTCCAATACTTGAGGAACCACAGTTGTCCGAGTCTCCAAAAATCAGGAAAGTCCAGAGGAAAAGTGTGGCTTATTCACCAAGTTGTCTTGGAAGTTGGAACAATGTGGTAGAGGAGAATTTGAGTTCCAGTAAAGATATATTAGGACAATCACTTAAAGAAGGTGAGCAGATGCGACCGTCACTACTGTCAAGCAAGGTTTTCCCAGGTCCTACCGAATCCTTGGCTGCAAGCCTTCAGAGGGGAttgcagataattgattatcaccaGAGAAACTCGGCATTAAACAAATCTTCAGCTTCCTTCTCTTTTGAGCACTTAACCTTGACACCTTGTCCAGAAATAGACAAGGGTGATTCTTGTGATCAAATAATGCAACAGAAGAAATATTATGTCGATGAAAGAACTGCTAATTTGCTTTGTGAATCTTGCCGTAAAAGAGTATACAATCGGGATTCTAGTGAGGTTCAAGATAGCTTAAAGTCATGGATTGAAACAGCTGAAGCAGGAAATCCAGATGGACTGACAGATAAGGTTCCAAGAGATCTACAAAGTATGATGGCAAAAGTGATCACGAGAGAAAAGGAGCTAGAGAATGTTTGCAAGGAGCAAGCTGCTAGAATTGAAGAACTAAATCAATTGGTGGAGAAAttgaaaggagaaaaagaactaaaatcCTCCATCATTGTGTATGAAAGCAACAAACAGACTAGACATGAAGAAGAGTATAACTCATTGAAAGATGAAGACAAGCTTCTAAGAGGCACTTCCTCAGACAGGCATTTACCAGATATTATAGAggaaaaatgtgaaattaaggAAGTCCAGGAAGAAGTAACTCAAAGAGACAGCTCTTTTGACGCAGCTGAGAAGGAAGAACTCCTTAAGGAAATTCAGAATCTAAGAAGCAAGCTGCAATTACATAGCGATGCTCCAGTTAAAAAGTCCACTGACAAACTGAGATCTTCCTTATCATTAATGTCAAGGTCCATTCAACTGCAAAAAAGTGTATTTTCTCATGATAATGGTGGAGATGAgctagagaaagagagacagagATGGACAGAAATGGAAAGTGAGTGGATTTGTCTGACGGATGAACTAAGAGTTGATCTCGAGTCCAACCGCCAGCGGGCAGAGAGGCTGGAGATGGAACTGAGTTTAGAAAAGAAGTGCACTGAAGAGTTAGACGATGCACTAAAAAGAGCGGTTCTTGGACATGCTAGAATGGTGGAACACTACGCTGACCtccaagaaaaatataatgatttggTTGCAAAGCACAATGCTATAATGGAGGGCATAGCAGAGGTGAAGAAGGCAGCTGCAAAGGCTGGAAAAAAGGGTCATGCTCGCTTTGCCAAATCTCTTGCTGCAGAGCTTTCTGCATTGAGGGTGGAGAGAGAAAGGGAAgcaaaattcttgaaaaaggAGAACATGAATCTCAAGATTCAACTCAGAGAAACTGCAGAAGCTGTTCATGCTGCTGGAGAACTGCTTGTCAGACTGAGAGAAGCTGAGCATGCAGCGTCTGTTGCAGAGGAGGATTTCACAAAAGTGCAACAAGATAATGAAAAGCTAAAAAAGCAAATGGATAAGCtgaaaagaaaacacaagatGGAGATGATTACCATGAAGCAGTACCTTGCAGAGAGCAAATTACCAGAGTCTGCACTGCAGCCACTATTTAAGGAGGATTCTGATGTGGTTCATAATGGTGCAACTTCTCATCCGGATGATGATCAGGCGTGGAGAGTAGAGTTTGGAGCAATCTATCAGCAGCATTATTAA 3669 0.3941 MRQSINAETAEARFSGTISSSSLRNFLPRSLSSKHKPTPNPKTPNSDAENTPPTDPNIQINHGQSLPSTNNQSLSKTSISQNNLNQSKHPLESDPSVKVVVRIRPTNNNGIEGDRTVKKVSSDTLCVGDRQFTFDSVFDSNTNQEDIFQSVGVPLVKNALAGYNTSILSYGQSGSGKTYTMWGPPSAMFEEPSPQSHKGIVPRIFQMLFSELEREQHVSEGKQFNYQCRCSFIEIYNEQIGDLLDPTQRNLEMKEDSKNALYAENLTEEYVTSYDEVTQILIKGLSSRKVGATSLNSKSSRSHIIFTFMIESWCKGISSNGFSSSKSSRISLIDLAGPDRNKVEDAGKQCLKESKNVKKSLSQLGHLVDALTKEAHSGKAEEISNRNSCLTRLLQESLGGNAKLSVICSISPDNKNNGETLRTLRFGQRVRTIRNEPVINEIKEDDVNDLSDQIRQLKEELIRAKAEVHSSDGSKNGYFQVRNVRDSLNQLRVSLNRSLLLPRIDNNTDEEVNVDEEDIRQLRQQIDELYHSCEGNPKNISVSEDCVQYYSVAENCDADMTSGDGDEIEKEDVCSGETLSTLRPEESEGSTATLYTSADDFACTANASRTIKSTFRDSISVSSCSQSPILEEPQLSESPKIRKVQRKSVAYSPSCLGSWNNVVEENLSSSKDILGQSLKEGEQMRPSLLSSKVFPGPTESLAASLQRGLQIIDYHQRNSALNKSSASFSFEHLTLTPCPEIDKGDSCDQIMQQKKYYVDERTANLLCESCRKRVYNRDSSEVQDSLKSWIETAEAGNPDGLTDKVPRDLQSMMAKVITREKELENVCKEQAARIEELNQLVEKLKGEKELKSSIIVYESNKQTRHEEEYNSLKDEDKLLRGTSSDRHLPDIIEEKCEIKEVQEEVTQRDSSFDAAEKEELLKEIQNLRSKLQLHSDAPVKKSTDKLRSSLSLMSRSIQLQKSVFSHDNGGDELEKERQRWTEMESEWICLTDELRVDLESNRQRAERLEMELSLEKKCTEELDDALKRAVLGHARMVEHYADLQEKYNDLVAKHNAIMEGIAEVKKAAAKAGKKGHARFAKSLAAELSALRVEREREAKFLKKENMNLKIQLRETAEAVHAAGELLVRLREAEHAASVAEEDFTKVQQDNEKLKKQMDKLKRKHKMEMITMKQYLAESKLPESALQPLFKEDSDVVHNGATSHPDDDQAWRVEFGAIYQQHY 1222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3537 1222 Coils Coil 1129 1170 - -
Ssu6g3537 1222 Coils Coil 512 532 - -
Ssu6g3537 1222 PANTHER CENTROMERE PROTEIN E 73 1222 - -
Ssu6g3537 1222 Gene3D Kinesin motor domain 92 475 IPR036961 -
Ssu6g3537 1222 Coils Coil 1084 1118 - -
Ssu6g3537 1222 MobiDBLite consensus disorder prediction 1 92 - -
Ssu6g3537 1222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 467 IPR027417 -
Ssu6g3537 1222 SMART kinesin_4 94 441 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu6g3537 1222 Pfam Kinesin motor domain 113 433 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu6g3537 1222 PRINTS Kinesin heavy chain signature 162 183 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu6g3537 1222 PRINTS Kinesin heavy chain signature 383 404 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu6g3537 1222 PRINTS Kinesin heavy chain signature 293 310 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu6g3537 1222 PRINTS Kinesin heavy chain signature 329 347 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu6g3537 1222 Coils Coil 440 467 - -
Ssu6g3537 1222 ProSiteProfiles Kinesin motor domain profile. 96 433 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu6g3537 1222 PANTHER KINESIN-LIKE PROTEIN KIN-12F 73 1222 - -
Ssu6g3537 1222 Coils Coil 991 1015 - -
Ssu6g3537 1222 Coils Coil 914 937 - -
Ssu6g3537 1222 MobiDBLite consensus disorder prediction 1 98 - -
Ssu6g3537 1222 Coils Coil 820 854 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3537 Ssu-Chr6 78716357 78722377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3537 90 461 Miscellaneous Gene Families AT5G06670 34.565 1.81e-53 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3537 K10400 - gmx:100782128 2049.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3537 6 78716357 78722377 Ssu6g3537 6 78716357 78722377 ECH
Ssu9g1032 9 41051455 41081184 Ssu6g3537 6 78716357 78722377 PCT