Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3522 ATGGCACCCTcaatttgttttcttctcttatccctTCTGTTCCTTTCATCCTCCACGAGTGGTGATCTCCAACATCATGAAGAGGGTTTCATCTCTCTGGTCATATCTGATAAGGGCCTTGATTTTGCCAAGGATTTTCTGATAGATCAAGCTGTTGCCTCTCTTGTTCTGTCTCAACTGCCACAGATTGAGAACTCTGTCCAAGTGCCTCTTGTTGGAAAAGCCAAAGTGGTTCTTTCTGACATCACAATCAATGATATCCAAGTTAATTCTTCATATGTTAAAACGGGAGACACAGGCATTGTTCTTGTGGTTTCATGTGCCACTGCCGACTTGACTTTGAAGTGGAGGTACACTATTAGCAGTTGGTTAGTCCCAATTGGAATTTCGGACAGTGGAACCGCCACTGTAAAGGTTAATGATTTGCAAGTGGGACTTACTGTGAATTTAAGGAACCAAGAAGGAACTCTTAAGTTGATTCTCTGGATTATGGATGTCATGCTAGTAGATGCTTTTGCAGGAAATATAGCATCTGCAGTTGAAGAGGCAATTtctgagaaaataaaagaggggACAGCAACTCTTGACTATTTATTGCAATCTCTTCCGAAGACAATCCCATTAGATGAAACTGCTGCTCTAAATATTTCTTTCGTGGACAATCCTGTGCTGAGTGATTCTTctattgaatttgaaattaatggtttattcaCAGGGAGAAACGGAGTTTTGGTACCTCAAGGTTATTGCAGACGATCAGACATTTCTGTTTCCTGTGGTGACCGTTCACCAAAGATGATAATGATTTCATTacatgaaaatgttttcaaatccGGTTCCTTGGTTTATTTCACTGCAGATAGCATGCAATGGATTGTTGATGAACTCCCTGATCAGGTCCTTTTGAACACTGCCGAATGGAGATTCCTTATTCCTCAATTATACAAGCAATATCCTAATGATGACATGAATCTTAATATCTCTGTATCTTCTCCACCGGATATACAAGTGACAAACAAAAATGTCGGTGTCAAAATTTTCatagatataataattgatGTTCTGGAAGCTGGTGAAGTCATACCTGTTGCATGCATCTCGGTGGATATTAGTGCCTCTTGTGCTGCAGAAGTCGTAGGAAACAATCTTGCTGGTTGGCTTAAATTGAGAAAGTTCTCCACTGACTTGAAATGGAGCAAAATAGGGAAACTGCACATGCATCTGATTCAGTCAGTGACGTCAGGCCGTCCTCAAAACCATCCTCATACCATACCTGAACTCACAGTTAATAAGGGGAATTCCACTGCCAATTTTTAA 1317 0.3789 MAPSICFLLLSLLFLSSSTSGDLQHHEEGFISLVISDKGLDFAKDFLIDQAVASLVLSQLPQIENSVQVPLVGKAKVVLSDITINDIQVNSSYVKTGDTGIVLVVSCATADLTLKWRYTISSWLVPIGISDSGTATVKVNDLQVGLTVNLRNQEGTLKLILWIMDVMLVDAFAGNIASAVEEAISEKIKEGTATLDYLLQSLPKTIPLDETAALNISFVDNPVLSDSSIEFEINGLFTGRNGVLVPQGYCRRSDISVSCGDRSPKMIMISLHENVFKSGSLVYFTADSMQWIVDELPDQVLLNTAEWRFLIPQLYKQYPNDDMNLNISVSSPPDIQVTNKNVGVKIFIDIIIDVLEAGEVIPVACISVDISASCAAEVVGNNLAGWLKLRKFSTDLKWSKIGKLHMHLIQSVTSGRPQNHPHTIPELTVNKGNSTANF 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3522 438 PANTHER OS06G0309200 PROTEIN 1 414 IPR045897 -
Ssu6g3522 438 MobiDBLite consensus disorder prediction 413 438 - -
Ssu6g3522 438 Pfam LBP / BPI / CETP family, C-terminal domain 262 412 IPR001124 GO:0008289
Ssu6g3522 438 Gene3D - 47 161 - -
Ssu6g3522 438 SMART bpi2_2 261 435 IPR001124 GO:0008289
Ssu6g3522 438 Gene3D - 192 416 - -
Ssu6g3522 438 PANTHER LBP/BPI/CETP FAMILY, CARBOXY-TERMINAL DOMAIN PROTEIN 1 414 - -
Ssu6g3522 438 Pfam LBP / BPI / CETP family, N-terminal domain 39 160 IPR017942 GO:0008289
Ssu6g3522 438 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 227 414 IPR017943 GO:0008289
Ssu6g3522 438 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 35 225 IPR017943 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3522 Ssu-Chr6 78381767 78385707 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3522 K05399 - gmx:100804747 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3522 6 78381767 78385707 Ssu6g3522 6 78381767 78385707 ECH
Ssu9g1009 9 40650590 40651987 Ssu6g3522 6 78381767 78385707 PCT