Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3520 ATGGCTCCGATGGGAGACAATGTTGTTGTGTCCAATATGGAACTGGAGAGGTTGCTTAGCATGAAAGGAGGCAAAGGAGAGGCCAGCTATGCCAACAATTCCCAAGCACAGGCCATACATGCCAAGTCCATGCTTCACCTTTTGAGAGAAACTCTAGACAGAGTTGAGCTTCAGGCACGTGGTGATGTACCATTTGTGGTGGTGGACTTGGGGTGTTCGTGTGGGAGCAACACCATAAACGTGGTGGATGTGATGATAAAGCACATGATGAAGAGGTACGAGGCTTTGGGGTGGCAGGCACCAGAGTTCTCCGCTTTCTTCTCAGACCTTCCCAGCAATGACTTCAACACACTCTTCCAGCTCCTTCCTCCGCTTGCCAACTATGGCGTCAGCATGGAAGAATGCCTTGCCGCCGACAACCACCGCTCCTACTTCGCCGCCGGAGTTCCCGGTTCCTTCTACCGGAGGCTTTTTCCGGCGAGGTCCGTTGATGTTTTCCACTCAGCCTTCTCTTTGCATTGGCTATCTCAGGTGCCAGAATGTGTAGTGGACAAGAGGTCAAGTGCTTACAACAAAGGAAGGGTGTTTATCCATGGTGCTGATGAGAGCACAGCAAATGCCTACAAGAAACAATTCCAAACAGACTTGGCAGGCTTTCTGAAGGCAAGGTCAGTGGAGATGAAGAGAGAGGGGTCCATGTTCTTAGTTTGCTTGGGCAGAACTTCAGCGGACCCCACAGACCAAGGTGGGGCTGGCCTTCTTTTTGGGACCCACTTTCAGGATGCTTGGGATGATCTTGTCCAAGAGGGATTAATTAGCCAAGAAAAACGAGACAGTTTTAACATTCCAGTTTATGCAGCGAGCCTGCAAGACTTCAAGGAGGTGGTTGAAGCTAATGGTTCATTTGCCATAGACAAGCTTGAGGTATTCAAAGGAGGAAGCCCTCTTGTGGTGAACCAACCAGATGATGCAAGTGAAGTGGGCAGGGCTCTAGCCAACAGCTGCAGGACCGTGTCTGGAGTCCTTGTTGATGCCCACATTGGTGACAAACTAAGTGAGGAGCTTTTTCTTAGAGTGGAGCGCCGAGCCACTTGTCATGCCAAAGAGCTATTAGAGCAACTACAGTTCTTTCACATAGTTGCGTCCCTTTCTTTTGCTCAATGA 1164 0.4991 MAPMGDNVVVSNMELERLLSMKGGKGEASYANNSQAQAIHAKSMLHLLRETLDRVELQARGDVPFVVVDLGCSCGSNTINVVDVMIKHMMKRYEALGWQAPEFSAFFSDLPSNDFNTLFQLLPPLANYGVSMEECLAADNHRSYFAAGVPGSFYRRLFPARSVDVFHSAFSLHWLSQVPECVVDKRSSAYNKGRVFIHGADESTANAYKKQFQTDLAGFLKARSVEMKREGSMFLVCLGRTSADPTDQGGAGLLFGTHFQDAWDDLVQEGLISQEKRDSFNIPVYAASLQDFKEVVEANGSFAIDKLEVFKGGSPLVVNQPDDASEVGRALANSCRTVSGVLVDAHIGDKLSEELFLRVERRATCHAKELLEQLQFFHIVASLSFAQ 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3520 387 Gene3D - 19 367 IPR042086 -
Ssu6g3520 387 PANTHER INDOLE-3-ACETATE O-METHYLTRANSFERASE 1 11 385 - -
Ssu6g3520 387 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 13 384 IPR029063 -
Ssu6g3520 387 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 11 385 IPR005299 GO:0008168
Ssu6g3520 387 Pfam SAM dependent carboxyl methyltransferase 59 383 IPR005299 GO:0008168
Ssu6g3520 387 Gene3D Vaccinia Virus protein VP39 33 313 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3520 Ssu-Chr6 78349170 78353044 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3520 K18848 - gmx:100807953 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3520 6 78349170 78353044 Ssu6g3520 6 78349170 78353044 ECH
Ssu9g1008 9 40614091 40616455 Ssu6g3520 6 78349170 78353044 PCT