Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3518 ATGGCAGTGACAGAATCACAAAATCCTCTTCTTGGAGAAAACACCTGTGGTTCCTTGTTAAAAAAGCTGCAGGAAATATGGGATGAGGTTGGTGAGAGCGACGAGCAACGAGACAAGATGCTACTTCAGTTAGAGCAGGAGTGCTTGGATGTGTACAAGAGAAAGGTTGAGCAGGCTGCAAAGTCAAGGGCACAGCTACTTCAAGCTTTGTCTGATGCTAAGCTTGAGCTTTCTAGTCTTCTTTCAGCACTTGGAGAAAAGGGCTTTGCTGGAATTCCTGAGAACACTTCTGGAACTATCAAGGAACAGCTTGCAGCTATAGCACCAGTACTTGAACAGTTATGgcaacaaaaggaagaaagaattAAGGAGTTCTCAGATGTACAGTCACAGATCCAACAAATATGTGGAGAGATAGCTGGGAACTTGAACCTTAATGATGTTTCACCTTCAGTTGATGAGAGTGACCTGTCCCTGAAGAAGTTAGATGAGTATCAATCTGAGCTCcaagaacttcaaaaggaaaagAGCGAGAGGTTGCACAAAGTTCTTGAATTTGTGAGTACTGTGCATGATCTATGTGCTGTCCTTGGTATGGACTTCTTCAGTACGGTAACTGAGGTTCATCCAAGCCTAAATGATTCTACTGGTGTTCAATCCAAGAGCATAAGTAACGACACCCTAGCTAGGCTGGCTAAGACTGTCTTAACGctgaaagaagataaaaaacaGAGGCTGCACAAGCTCCAAGAATTAGCTTCTCAGTTGATTGATCTTTGGAATCTAATGGATACTCATCCAGAGGAAAGGAGACTATTTGACCATGTTACCTGTAATATGTCAGCTTCTGTTGATGAAGTCACTGTTCCTGGTGCCCTTACTCTGGATCTGATTGAGCAGgCTGAAGTGGAAGTCGAGAGACTTGATCAGTTGAAAGCCAGCAGGATGAAGGAAATTGCTTTCAAGAAGCAAGCAGAACTTGAAGAGATATTTGCCCATGCTCATATAGAAATAGATCCAGATGTTGCCCGGGAGAAGATTATGGCATTGATCGATTCAGGAAACATTGAACCAGCTGAATTACTGGCTGACATGGACAATCAGATAGcaaaagcaaaagaagaagCTTTAAGCCGAAAAGATATATTGGACAAGGTTGAGAAATGGATGTCAGCATGTGAAGAAGAGAGTTGGCTTGAAGACTATAATCGGGATGAGAACAGGTATAATGCAAGCAGAGGTGCACACTTAAACCTCAAACGTGCCGAGAAAGCTCGGATATTGGTCAATAAAATTCCAGCTCTGGTTGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATGGCATGTCATTTACATATGATGGTGTTCCTCTTCTCGCCATGTTAGATGAATATGCCATGCTTAGACATGAACGGGAAGAAGAAAAACGGAGGATGAGGGATCAGAAAAAACATCATGAGCAGCGAAACACTGAACAAGAAGCcatctttggttcaagacccAGCCCTGCTAGGCCAGTTAGTTCCAGTAAGGCTGGAGGTCCTCGTACTAATGGAGGAGCCAATGGTACTCCTAACCGACGGCTATCACTTAATGCTCATCAAAATGGAAGCAGGTCCACATCAAAAGATGGAAAAAGGGATAATACAAGACCAGTTGCTCCCGTGAATTATGTGGCCATATCAAAAGAAGATGCTGCTTCCCATGTTTCTGGTACTGAACCCATCCCGGCATCACCCTAA 1752 0.4132 MAVTESQNPLLGENTCGSLLKKLQEIWDEVGESDEQRDKMLLQLEQECLDVYKRKVEQAAKSRAQLLQALSDAKLELSSLLSALGEKGFAGIPENTSGTIKEQLAAIAPVLEQLWQQKEERIKEFSDVQSQIQQICGEIAGNLNLNDVSPSVDESDLSLKKLDEYQSELQELQKEKSERLHKVLEFVSTVHDLCAVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLTLKEDKKQRLHKLQELASQLIDLWNLMDTHPEERRLFDHVTCNMSASVDEVTVPGALTLDLIEQAEVEVERLDQLKASRMKEIAFKKQAELEEIFAHAHIEIDPDVAREKIMALIDSGNIEPAELLADMDNQIAKAKEEALSRKDILDKVEKWMSACEEESWLEDYNRDENRYNASRGAHLNLKRAEKARILVNKIPALVDTLVAKTRAWEEDHGMSFTYDGVPLLAMLDEYAMLRHEREEEKRRMRDQKKHHEQRNTEQEAIFGSRPSPARPVSSSKAGGPRTNGGANGTPNRRLSLNAHQNGSRSTSKDGKRDNTRPVAPVNYVAISKEDAASHVSGTEPIPASP 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3518 583 Coils Coil 461 492 - -
Ssu6g3518 583 MobiDBLite consensus disorder prediction 476 583 - -
Ssu6g3518 583 Coils Coil 155 182 - -
Ssu6g3518 583 Coils Coil 239 259 - -
Ssu6g3518 583 MobiDBLite consensus disorder prediction 506 542 - -
Ssu6g3518 583 Pfam Microtubule associated protein (MAP65/ASE1 family) 18 507 - -
Ssu6g3518 583 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 5 583 IPR007145 GO:0000226|GO:0008017
Ssu6g3518 583 PANTHER 65-KDA MICROTUBULE-ASSOCIATED PROTEIN 1 5 583 - -
Ssu6g3518 583 MobiDBLite consensus disorder prediction 476 496 - -
Ssu6g3518 583 Gene3D - 368 502 - -
Ssu6g3518 583 Coils Coil 49 76 - -
Ssu6g3518 583 Coils Coil 298 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3518 Ssu-Chr6 78324644 78327762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3518 13 540 EF-hand Containing Proteins AT5G62250 42.018 1.16e-124 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3518 K16732 - gmx:100806071 1059.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3518 6 78324644 78327762 Ssu6g3518 6 78324644 78327762 ECH
Ssu9g1006 9 40599814 40603817 Ssu6g3518 6 78324644 78327762 PCT