Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3063 ATGACAAACACTGAAGAACCGTCTCCTCCGAACCGTAACAATCGCACTCAACACTCCACCAACGGCGATGCGGAACCccacgacgacgacgacgacgacatcgaagacgacgacgacgacgacgacaaCGACGACGTCGTTCAGGAACCGAATCGCGGAATTCCCCAATCCACGGCGTCCAAGTTGCGGGAGCAGCGTTTCAAGGTGGAAACCCTGTCGCAGCGCTTGTCGTCGGAGCTGGTTCCGATCCGAGTCCACGACGTGGTTATAAACGGCAACACGAAGACCAAGGATTGGGTGATTGAGGCGGAGCTGAAAGGCATCGAAAACGCCACCAGCATGCAGGAGCTTATGCAAGCTTCGCAAATCGCCATTGCCAGGCTTCAGGACCTCGAAATCTTCGATTCCTGCAAGGTTCGCCTCGAGGCAGGTCCCCGAGAACTCCCAAACACCGCCAATGTCATCGTCGACGTTGTCGAAACCGATAACAAAGTTTCCGGCGAATGTGGCGTTTATACCAAACCCTCGACTAGTTCTTGGACTGCTGAAGGTACTCTTAAGTATAAGAACTTGTTGGGTTATGGTGATTTATGGGATGCTTCTTTGGCCTATGGTGCGAACCAAGCGACTGAGGTGAGTGTAGGGGTGTATGCCCCTCGAGTTACAGGATTGTTAACTCCTATTGTGGCGCGGATATCCATGCTTTCGCAAGATTGGCAAGAGTCTTCCTCGTACAAAGAGCAGTTGCTGGGTGCATCTCTTGGCTTGATCTCGACAAAGCACCATGACTTAGCATACACACTTGGATGGCGTACCTTGACAGATCCGTCACAGATGTCATCCAGGTCTATAAGGAGGCAGCTTGGGCATGGTTTAGTGTCATCTTTGAAGTATACGTTTAAAGTTGATAGGAGAAATTCTCCTATTAGGCCAACAAAAGGATATGCTTTTCTTTCCACCACTCACGTTGGTGGCCTTACACCGGATCACAGGAGCTTGCGGTTTCTGCGTCAGGAGTTTGATGTTCGCTTTGCTGTCCCTTTTGGTTTTTACAATACAGCGCTAAACCTTGGGATATCTGCTGGTGCTGTTTTTCCATGGGGACATGGATTCAAAACCAAGCCATCTCCCCTTCCAGAAAGGTTTTATCTGGGTGGTGATTTTTCTCCAGTTTGCACCCTAGGAGGACCAACAACATTATGGGGATTTAAAACTAGAGGATTAGGTCCTACTGAACCACGGAGGCAAAATAGAGATGGGTCTAATGATGACAATGTTGATTCCTCTGGATGGGACTTCATTGGCGGAGATCTTGCTGTTACTGCTTTTGCAGATCTCTCTTTTGATCTTCCAATTAGGTGGTTGAGAGAACATGGAATCCATGGGCATATTTTTGCTGGTTCTGGAAATGCTGCTAAATTAACTCAGAATGAATATAGACACTTCTCTCCTCGGAAGTTCTTAGAATCCTTTCGAATGTCAGTGGGATGTGGAGTTGTTATTCCTACTAGACTCTTCCGCCTAGAGGGTAACTACTTCTACGTACTCAGAAAGGATGAGCATGATCGTGGGAAAACTGGATTTAGGTTTAGCTTCTCAGCTCCTTCGTAG 1611 0.4643 MTNTEEPSPPNRNNRTQHSTNGDAEPHDDDDDDIEDDDDDDDNDDVVQEPNRGIPQSTASKLREQRFKVETLSQRLSSELVPIRVHDVVINGNTKTKDWVIEAELKGIENATSMQELMQASQIAIARLQDLEIFDSCKVRLEAGPRELPNTANVIVDVVETDNKVSGECGVYTKPSTSSWTAEGTLKYKNLLGYGDLWDASLAYGANQATEVSVGVYAPRVTGLLTPIVARISMLSQDWQESSSYKEQLLGASLGLISTKHHDLAYTLGWRTLTDPSQMSSRSIRRQLGHGLVSSLKYTFKVDRRNSPIRPTKGYAFLSTTHVGGLTPDHRSLRFLRQEFDVRFAVPFGFYNTALNLGISAGAVFPWGHGFKTKPSPLPERFYLGGDFSPVCTLGGPTTLWGFKTRGLGPTEPRRQNRDGSNDDNVDSSGWDFIGGDLAVTAFADLSFDLPIRWLREHGIHGHIFAGSGNAAKLTQNEYRHFSPRKFLESFRMSVGCGVVIPTRLFRLEGNYFYVLRKDEHDRGKTGFRFSFSAPS 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3063 536 PANTHER OUTER MEMBRANE OMP85 FAMILY PROTEIN 17 534 - -
Ssu6g3063 536 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 17 534 IPR039910 -
Ssu6g3063 536 MobiDBLite consensus disorder prediction 1 62 - -
Ssu6g3063 536 Pfam Surface antigen variable number repeat 83 160 IPR010827 GO:0019867
Ssu6g3063 536 Gene3D membrane protein fhac 82 161 - -
Ssu6g3063 536 MobiDBLite consensus disorder prediction 1 20 - -
Ssu6g3063 536 MobiDBLite consensus disorder prediction 405 424 - -
Ssu6g3063 536 Pfam Omp85 superfamily domain 190 533 IPR000184 GO:0019867
Ssu6g3063 536 MobiDBLite consensus disorder prediction 26 46 - -
Ssu6g3063 536 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 174 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3063 Ssu-Chr6 70058338 70069150 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3063 K07277 - gmx:100802876 981.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3063 6 70058338 70069150 Ssu6g3063 6 70058338 70069150 ECH
Ssu9g1618 9 52830937 52835791 Ssu6g3063 6 70058338 70069150 PCT