Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3035 ATGGGCAATAACATGGCTACCTACAACAAGTACAAaagttttttgttctttatcaaAAAGTTCAAGGTCACCGAGCCAGTTCCACCTCAGGACCTCAAGGAGGCGTTTTCAAAGTTCACCGGAGGAGGGTCCCACATGTCTGCGGAGCAGCTCCACCGTTTCCTGGTGGAACATCAGGCCGAGGAAGACTGCACCTTATCGGATTCGGAGAAAGTTGTTAGGAAGGCTTTGCAAGTGAGAAAGACATGTCAAGAAACTGTTAACATTGATCAAAACAGAGAGCAGGAAATCACCCTTGATGAGCTCTTCCGTTTTTTGCTTCATGACGATTTCAACGGTCCCTTGAAAGTTGAGGTACATCATGATATGGGTGCTCCATTGTcacattatttcatatatacagGCCATAACTCCTATTTGACAGGGAACCAACTCAGCAGTGACTGCAGTGAAGAGCCAATCATAAAGGCTTTGAAACGTGGCGTGCGTGTTATTGAACTTGATTTATGGCCAACTTCCAATAAAGATGATATTAAAGTAGATCATGGATGGACTCTTACGAACCCTGTCTCAGTTATCAAATGTCTGGAGTCCATAAAGGAATATGGTTTTGTTGCATCTCAGTACCCAGTGATCATAACCATAGAAGACCATCTTACAACAGATCTTCGAGCTAAATTTGCAGAAATGGCAACTCAAATATTTGGAGAAATGCTTTATTACCCTGGGACAGATTGTCGTTTAACAGAATTCCCTTCACCGGAATCACTGAAAAATAGAGTTATTATATCAACCAAACCGCCGAAAGAACGTTTTGAGTCCAACCGTATCAAGGACAATACCAACTGTCCTATGCTAAATGAAAGTGAATCATCTGAAGATGAGTCATGGGGAAAGGAATCTCCAGACTCTAGTAGGAATGAAGTGGAGACTGAGGGCACGAATGGAAGTGATCCTGATGAGAGAGACGTGAATGCACTTGAATGTGACCACAAATCATATCAGGAGTGTTCACCTGATTACAAACGCATAATTACTATCCATAATAGGAAATTCAAGGGTTGCCTGAAGGACAAATTGAGAACCGATGGTGAACTTAGACGCCTAAGTTGGAGTGAGACGACCCTTGAAAAGGCTTCAGAATCTCATGGAACAGATATTGTTAGGTTCACACAGAAAAATATATTGAGGGTGTACCCAAGCGCAATGCGTGTCAAATCCTCAAATTTCAAGCCACATATTGGGTGGATGTATGGGGCTCAGATGGTTGCATTCAATATGCAGGGGCATGGCAAATCACTCTGGTTGATGCAGGGGATGTTCCGGGCAAATGGAGGATGTGGTTATGTAAAGAAGCCTCAAATTCTAATGCAGAAGCATCAGTGTGACAATGAGTTTGATCCTACAATGATACAGTCAGTGAAAAAGATATTAAAGGTAAAAGTATACATGGGACTTGGGTGGAGCTCAGATTTCAGCCCTACACACTTTGATAAGTGTTCTCCACCAGACTTCTACGCTAAGGTCCGTATTGTTGGAATGCCTGCTGATGttgcaaagaagaaaacaaaggttATGATGGACAACTGGTTTCCTGTTTGGGATGAAGAGTTTGAATTCCGTTTGACTGTTCCAGAGCTTGCATTGCTTCTGATACAAGTAAAGGACAAAGATCCGGGAAAGGATGACTTTGCTGGGCAGACGTGTTTGCCAGTGTCAGAGCTAAAACTTGGATTTCCCTTGCATGCTGTATCCACCTCTAACATCACATGGTTTGACCAGATCACTACTACATTTGTCATAATTAATCAGTGA 1815 0.4149 MGNNMATYNKYKSFLFFIKKFKVTEPVPPQDLKEAFSKFTGGGSHMSAEQLHRFLVEHQAEEDCTLSDSEKVVRKALQVRKTCQETVNIDQNREQEITLDELFRFLLHDDFNGPLKVEVHHDMGAPLSHYFIYTGHNSYLTGNQLSSDCSEEPIIKALKRGVRVIELDLWPTSNKDDIKVDHGWTLTNPVSVIKCLESIKEYGFVASQYPVIITIEDHLTTDLRAKFAEMATQIFGEMLYYPGTDCRLTEFPSPESLKNRVIISTKPPKERFESNRIKDNTNCPMLNESESSEDESWGKESPDSSRNEVETEGTNGSDPDERDVNALECDHKSYQECSPDYKRIITIHNRKFKGCLKDKLRTDGELRRLSWSETTLEKASESHGTDIVRFTQKNILRVYPSAMRVKSSNFKPHIGWMYGAQMVAFNMQGHGKSLWLMQGMFRANGGCGYVKKPQILMQKHQCDNEFDPTMIQSVKKILKVKVYMGLGWSSDFSPTHFDKCSPPDFYAKVRIVGMPADVAKKKTKVMMDNWFPVWDEEFEFRLTVPELALLLIQVKDKDPGKDDFAGQTCLPVSELKLGFPLHAVSTSNITWFDQITTTFVIINQ 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3035 604 Pfam Phosphatidylinositol-specific phospholipase C, X domain 123 266 IPR000909 -
Ssu6g3035 604 Gene3D - 27 113 - -
Ssu6g3035 604 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 477 582 IPR035892 -
Ssu6g3035 604 SMART C2_3c 477 584 IPR000008 -
Ssu6g3035 604 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 1 580 - -
Ssu6g3035 604 CDD C2_PLC_like 475 582 - -
Ssu6g3035 604 ProSitePatterns EF-hand calcium-binding domain. 90 102 IPR018247 -
Ssu6g3035 604 SMART plcy_3 341 457 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Ssu6g3035 604 PRINTS Phospholipase C signature 126 144 IPR001192 GO:0035556
Ssu6g3035 604 PRINTS Phospholipase C signature 152 172 IPR001192 GO:0035556
Ssu6g3035 604 PRINTS Phospholipase C signature 250 267 IPR001192 GO:0035556
Ssu6g3035 604 PRINTS Phospholipase C signature 570 580 IPR001192 GO:0035556
Ssu6g3035 604 PRINTS Phospholipase C signature 395 416 IPR001192 GO:0035556
Ssu6g3035 604 PRINTS Phospholipase C signature 416 434 IPR001192 GO:0035556
Ssu6g3035 604 Gene3D Phosphatidylinositol (PI) phosphodiesterase 118 470 IPR017946 GO:0006629|GO:0008081
Ssu6g3035 604 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 1 580 IPR001192 GO:0035556
Ssu6g3035 604 Gene3D C2 domain 471 598 IPR035892 -
Ssu6g3035 604 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 364 454 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Ssu6g3035 604 MobiDBLite consensus disorder prediction 292 324 - -
Ssu6g3035 604 SMART plcx_3 121 266 IPR000909 -
Ssu6g3035 604 ProSiteProfiles C2 domain profile. 458 585 IPR000008 -
Ssu6g3035 604 SUPERFAMILY PLC-like phosphodiesterases 121 458 IPR017946 GO:0006629|GO:0008081
Ssu6g3035 604 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 370 456 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Ssu6g3035 604 Pfam C2 domain 498 578 IPR000008 -
Ssu6g3035 604 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 121 266 - -
Ssu6g3035 604 MobiDBLite consensus disorder prediction 270 324 - -
Ssu6g3035 604 SUPERFAMILY EF-hand 11 123 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3035 Ssu-Chr6 69455388 69520351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3035 3 578 Acyl Lipid Metabolism Gene Families AT2G40116 54.090 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3035 K05857 - gmx:100820253 1056.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1592 9 52250261 52254120 Ssu6g3035 6 69455388 69520351 PCT