Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3018 ATGGTTGATTTAGATTGGCAATCAAAGATGATGCGCTCCAACATGCCTCCCAAGTCCCCCAAACTCTCTGTCCCCGATAACATCCCAATCCCCACTTTGCAACTCCCCCTTCGCCAAAACGACATCACCGCAGCGTCGTCCCCTGTCTGCGCCGCATACGACAACTACCTCCGCCTCCCTCACCTCAGAAGCCTCTGGGCCTCCAACGACTTCCCCAACTGGGCCAACGAGCCCATCCTAAAGCCCGCCTTACACGCCCTCGAAATCACCTTCCGGTTCCTCGCAACCGTTTTATCCGACCCGAGACCCTACGTGAACAAGCGCGAGTGGACCCGACGGGTCGAGTCCCTCGCCACGGCCCAGGTCCAGATCATATCCATGCTCTGCGAGGAAGAGGAACAAAACCCCGAGACACGTGGCAAGGCACCGGTGAGCGACATTAACTGCATCATCACCGgactttataataatagtaacagaTGCTACAGCGAGGAAAGCTTGCTCCCGCGGCTCGCCACGTGGCACAAATCCAAGGACGTGGCGAAGAGGATCCTCGCCTCCGTGGAATGCGAGATGACGAGGTGCACGTACACGCTGGGTCTGGGCGAGGCGAATCTCGCGGGAAAGCCGATCCTCCGCTACGACAGCGTCTGCAGGCCGAGCGAGATTCACGCGTTGGAGACCACCCCGTACGACCACGTGGGGAACCACGAGAACAGGACGCTGCACGCGACGCAGCAGATCGTGGAGTGCTGGGCGCGCGCGGCGGGGAAGCTGCTCGAGAGGGCGGCGGAGTCGGTGGAGAGGAGGACGCTGGAGAAGGCCGCGAGCGAGTGCCACGCGGTGGAGCGGATCTGGAAGTTTCTGACGGAGGTGGAGGACGCGCACGTGATGATGGATCCGGAGGATTTTCTGAGGCTGAAGAAGCAGCTGGGGTTGAGAACATGGGGCGAAACGGCGCCGTTCTGCTTCAGGTCGAGGGAGCTGGTGGAGGTGGCGAAGGTGTGTAGGGATCTGAGGCAGAGGGTGCCGGAGATcttggaggtggaggtggaccCCAAGGGTGGGCCCGGGATGATGGAGGCGGCGATGAAGGTGTACGCGGAGAAACGGAAGGGGTTCGACAAGGTGCACGTCTTGCAGGGTATGCAGGCGATTGAGGTGGCCATGAAGCGGTTCTTCTACGCGTATAAGCAGGTTGTGACGGTTATGATGGGGAGCTCCGAGGCGGACGGGAACTCTTCTCACTCCTTGACTCAGATATTCCTTGAACCCACGTATTTCCCTAGCTTGGATGCCGCCAAGACTTTTCTCGGTTATTATTGGGAAAATAACCAAAGTGCAATTCCTTGGCAGTTaatcaattga 1368 0.5724 MVDLDWQSKMMRSNMPPKSPKLSVPDNIPIPTLQLPLRQNDITAASSPVCAAYDNYLRLPHLRSLWASNDFPNWANEPILKPALHALEITFRFLATVLSDPRPYVNKREWTRRVESLATAQVQIISMLCEEEEQNPETRGKAPVSDINCIITGLYNNSNRCYSEESLLPRLATWHKSKDVAKRILASVECEMTRCTYTLGLGEANLAGKPILRYDSVCRPSEIHALETTPYDHVGNHENRTLHATQQIVECWARAAGKLLERAAESVERRTLEKAASECHAVERIWKFLTEVEDAHVMMDPEDFLRLKKQLGLRTWGETAPFCFRSRELVEVAKVCRDLRQRVPEILEVEVDPKGGPGMMEAAMKVYAEKRKGFDKVHVLQGMQAIEVAMKRFFYAYKQVVTVMMGSSEADGNSSHSLTQIFLEPTYFPSLDAAKTFLGYYWENNQSAIPWQLIN 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3018 455 Pfam Hs1pro-1 N-terminus 1 189 IPR009869 GO:0006952
Ssu6g3018 455 Gene3D - 212 315 - -
Ssu6g3018 455 PANTHER NEMATODE RESISTANCE HSPRO2-LIKE PROTEIN 1 448 - -
Ssu6g3018 455 PANTHER NEMATODE RESISTANCE PROTEIN-LIKE HSPRO1 1 448 IPR038759 -
Ssu6g3018 455 Pfam Hs1pro-1 protein C-terminus 192 444 IPR009743 -
Ssu6g3018 455 SUPERFAMILY Indolic compounds 2,3-dioxygenase-like 214 438 IPR037217 GO:0019441|GO:0020037|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3018 Ssu-Chr6 69173985 69175352 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3018 - - gmx:100778560 725.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3018 6 69173985 69175352 Ssu6g3018 6 69173985 69175352 ECH
Ssu9g1575 9 51984269 51985828 Ssu6g3018 6 69173985 69175352 PCT