Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3003 ATGGAGGATCGGGACGTGAGGCGGATGACGACGACGAGGCTGTCGGATGTGGTGCTGGACTGCGTGATGCCGTACATCCACGACCCCAAGGACCGGGACGCGGTGTCGCAGGTGTGCCGGCGGTGGTACGAGCTCGACTCGCTCACGCGGAAGCACGTGACCATTGCGCTGTGTTATACAACGACGCCCGACCGGCTCCGGCTGCGGTTCCCGCACCTGGAGTCGCTGAAGCTGAAGGGGAAGCCGCGGGCGGCGATGTTCAACCTGATACCGGAGGATTGGGGAGGCTTTGTTACGCCTTGGGTTAAAGAGATCTCTCAGTACTTCGATTGCTTGAAGTCGCTTCACTTTCGCCGCATGATTGTGACGGATTCCGATCTTCAGGTCCTGGCTCGGTCGCGCGGGCACGTGCTTCAGGCTCTTAAGCTCGATAAGTGTTCTGGGTTCTCCACCGATGGCCTTTACTATATCGGTCGCTTTTGCAgGAATTTAAGAATCTTGTTTTTAGAGGAAAGCTCACTTGTTGAGAATGATGGTGACTGGCTCCATGAGCTTGCTTTGAATAATACGGTTCTCGAGACACTGAATTTTTACTTGACTGATATTGCCAATGTCAGAATCCAGGACCTTGAACTTATAGCCCGAAATTGCCCCAACTTAGTCTCTGTGAAAATCACTGATTGTGAAATATTGGATCTGGTGAACTTCTTTCGATATGCCTCTACTCTAGAAGAATTTTGTGGAGGTTCCTACAATGAGGAATCGGAGAAGTACTCTGCTATATCATTGCCAGCAAAACTAAGTCGTTTGGGTTTGACATATATTACAAAGAATGAAATGCCCATCGTGTTCCCTTATGCAGCCTTACTGAAAAAATTGGATCTTCTCTATGCAATGCTGGATACAGAGGACCACTGTACGTTAATCCAAAGGTGCCCCAACTTGGAAGTCCTTGAGTCAAGGAACGTAATTGGAGACAGAGGATTAGAAGTGCTTGCTCGCTGTTGTAGGAGGCTTAAAAGGCTTCGGATTGAACGAGGGGATGATGATCAAGGAATGGAGGATGAAGAAGGTGTTGTTTCCCAGAGAGGACTAATTGCTTTGTCACATGGCTGTCCAGAACTTGAATACTTGGCCGTTTATGTATCCGACATTACAAATGCTTCTCTAGAACACATTGGTACTCACTTGAAAAACCTTTGTGATTTTCGCCTTGTCTTGCTAGACCGTGAAGAGAAAATAACTGATTTGCCACTTGACAACGGAGTGAGGGCTTTACTGAGGGGTTGTGACAAGCTCAGAAGATTTGCTCTGTATCTCAGACCTGGGGGCTTGACTGATGTGGGCCTCGGTTACATAGGGCAATACAGCCCCAACGTGAGATGGATGCTTCTTGGTTATGTGGGGGAGACTGATGCAGGGCTTTTGGAATTCTCTAAGGGCTGTCCCCAGTCTTCAGAAACTCGAAATGAGGGGATGTATCTATGGGTTCAAGGGTATGGAGCATCTCCTTCTGGACGTGATCTTTTGGCAATGGCTCGCCCCTATTGGAACATCGAGTTGATTCCTTCTAGACGCGTGGTTGTTAACAACCACCTTGAAGAGCCTGTAGTTGTTGAGCATCCGGCTCATATTCTTGCGTATTACTCCCTTGCTGGCCCAAGAACAGATTTTCCAGATACTGTTATACCTTTGGATCCTGCGGCATATGTTGACACGTGA 1722 0.4849 MEDRDVRRMTTTRLSDVVLDCVMPYIHDPKDRDAVSQVCRRWYELDSLTRKHVTIALCYTTTPDRLRLRFPHLESLKLKGKPRAAMFNLIPEDWGGFVTPWVKEISQYFDCLKSLHFRRMIVTDSDLQVLARSRGHVLQALKLDKCSGFSTDGLYYIGRFCRNLRILFLEESSLVENDGDWLHELALNNTVLETLNFYLTDIANVRIQDLELIARNCPNLVSVKITDCEILDLVNFFRYASTLEEFCGGSYNEESEKYSAISLPAKLSRLGLTYITKNEMPIVFPYAALLKKLDLLYAMLDTEDHCTLIQRCPNLEVLESRNVIGDRGLEVLARCCRRLKRLRIERGDDDQGMEDEEGVVSQRGLIALSHGCPELEYLAVYVSDITNASLEHIGTHLKNLCDFRLVLLDREEKITDLPLDNGVRALLRGCDKLRRFALYLRPGGLTDVGLGYIGQYSPNVRWMLLGYVGETDAGLLEFSKGCPQSSETRNEGMYLWVQGYGASPSGRDLLAMARPYWNIELIPSRRVVVNNHLEEPVVVEHPAHILAYYSLAGPRTDFPDTVIPLDPAAYVDT 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3003 573 PANTHER CORONATINE-INSENSITIVE PROTEIN 1 11 484 - -
Ssu6g3003 573 SUPERFAMILY RNI-like 71 463 - -
Ssu6g3003 573 Gene3D - 1 50 - -
Ssu6g3003 573 Pfam Transport inhibitor response 1 protein domain 71 117 IPR041101 -
Ssu6g3003 573 SUPERFAMILY F-box domain 7 51 IPR036047 GO:0005515
Ssu6g3003 573 Pfam F-box 12 52 IPR041567 -
Ssu6g3003 573 Gene3D Ribonuclease Inhibitor 51 569 IPR032675 -
Ssu6g3003 573 PANTHER CORONATINE-INSENSITIVE PROTEIN 1 494 568 - -
Ssu6g3003 573 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 11 484 - -
Ssu6g3003 573 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 494 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3003 Ssu-Chr6 68872592 68877919 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3003 K13463 - gmx:100793081 1068.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3003 6 68872592 68877919 Ssu6g3003 6 68872592 68877919 ECH
Ssu9g1566 9 51799060 51802769 Ssu6g3003 6 68872592 68877919 PCT