Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2953 ATGTCCGACGAGTTCGAGGTCGGGCACTTCGAGCCCGGGACGGGGGAGGAGCGGGGGAACGAGACCGCCGTCGAAGATGCCGCGTCTGCTCCGAAATTCGTGATTAGCAAGTTTGCGATGTGCCCGCGCGGCATGAGCGACCTTATACCTTGTTTGGATAACGCGGAAGCGATTCGGAAACTTGAGTCCACGGAGAGAGGGGAGAAGTTCGAGAGGCATTGTCCCGAAGAGGGGAGAAGATTCAGTTGCCTGATTCCGCCGCCTAAAGGGTACCGTCCACCGATTCCGTGGCCCAGGAGCCGCGATGAGGTATGGTACAGTAATGTTCCTCACACTCGTCTTGTTGAAGATAAAGGGGGTCAAAACTGGATTTCCAGAGGCAAGCACAAGTTTAGGTTTCCGGGGGGTTGTACACAATTTATACACGGAGCAGATCAATACTTGAACCATATTTCTGagATGGTTCCTGATATTAGGTTTGGGCAGAATATAAGAGTTGCTCTTGATGTTGGCTGTGGGGTAGCTAGTTTTGGTGCATACTTATTGTCGCGAAATGTCATAACCATGTCTGTTGCTCCCAAGGATGTTCATGAGAATCAGATCCAGTTTGCTCTCGAGCGTGGAGTGCCCGCAATGATGGCTGCATTTGCAACTAGGCGTTTATTATATCCAAGTCAAGCTTTTGACTTGATACATTGTTCGCGCTGTAGAATTAATTGGACTCGTGATGATGGTATTTTACTGCTTGAAGTTAATAGGATGCTAAGGGCAGGAGGGTACTTTGTCTGGGCCGCCCAACCGGTTTATAAACATGAGGAAGTTTTAGAAGAACAATGGGAAGAGATGCTTAATCTTACTACTCGTCTATGCTggaagtttttgaaaaaagatgGGTACGTTGCAGTATGGCAGAAACCTTCTGACAATAGCTGCTATCTAAACCGTGAGGCAGGAACTCAACCTCCACTGTGTGACCAAAGTGATGACAACGACAATGTTTGGTATGTTAATCTAAAAGCATGCATCTCTCAATTGCCTGAGAATGGATATGGAGCAAATGTTGCCAGATGGCCTGCACGCTTGCATACTCCACCTGATAGGCTTCAAAGCATAAAATTTGATGCTTTCATATCCAGAAAAGAGCTTTTTAAGGCAGAATCAAAATATTGGGATGAGATAATAGCAAGTTATGTACGTGCTTTACATTGGAAGAAGATGAAATTAAGAAATGTCATGGACATGAGAGCTGGTTTTGGAGGGTATTGTCTTTATCCTATTTCCTTTCTTGttataatatga 1299 0.4496 MSDEFEVGHFEPGTGEERGNETAVEDAASAPKFVISKFAMCPRGMSDLIPCLDNAEAIRKLESTERGEKFERHCPEEGRRFSCLIPPPKGYRPPIPWPRSRDEVWYSNVPHTRLVEDKGGQNWISRGKHKFRFPGGCTQFIHGADQYLNHISEMVPDIRFGQNIRVALDVGCGVASFGAYLLSRNVITMSVAPKDVHENQIQFALERGVPAMMAAFATRRLLYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAAQPVYKHEEVLEEQWEEMLNLTTRLCWKFLKKDGYVAVWQKPSDNSCYLNREAGTQPPLCDQSDDNDNVWYVNLKACISQLPENGYGANVARWPARLHTPPDRLQSIKFDAFISRKELFKAESKYWDEIIASYVRALHWKKMKLRNVMDMRAGFGGYCLYPISFLVII 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2953 432 MobiDBLite consensus disorder prediction 1 25 - -
Ssu6g2953 432 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 47 422 IPR004159 GO:0008168
Ssu6g2953 432 Gene3D Vaccinia Virus protein VP39 145 318 IPR029063 -
Ssu6g2953 432 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 2 422 IPR004159 GO:0008168
Ssu6g2953 432 PANTHER METHYLTRANSFERASE PMT12-RELATED 2 422 - -
Ssu6g2953 432 MobiDBLite consensus disorder prediction 1 23 - -
Ssu6g2953 432 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 71 285 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2953 Ssu-Chr6 67943795 67947456 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2953 - - gmx:100786553 783.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2953 6 67943795 67947456 Ssu6g2953 6 67943795 67947456 ECH
Ssu9g1520 9 51011353 51016027 Ssu6g2953 6 67943795 67947456 PCT