Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2950 ATGTACCTCTCTTTGCCTTTAATTAATTCAGCAATAGAACTGGGAGGGCCTTCCATTTGCTGTCACCCAAGGTTGCTGAACTTAATTCAGGATGAATTGCTCCGTAATCTGATGCAATTTGGTTTGTCAATGAACCCCCTTATACTTTCAATGGTATGCAGCATTATTCTCAACCTGTATCATCATCTTCGTACTGAACTCAAGTTACAGCtagaagcattttttttcttgtgtaaTTTTGAGACTAGCACAAAGCAGATAAGCAGATATGGGGCTTCATACCAGCAGCAGGAGGTAGCCATGGAGGCCCTTGTTGACTTCTGTAGGCAAAAAACATTTATGGTAGATATGTATGCTAACTTTGACTGTGACATAACTTGCAGCATTGTCTTTGAAGACCTTGCAAATTTGTTGTCAATAAGTGCATTTCCTGTGAACTGTCCATTGTCTTCCACGCACATTCTTGCTTTGGATGGTCTAATTGCTGTTATTCAGGGAATGGCTGAAAGGATAGGCAATGGATCTTTAAGTTCAGAACATTCTCCTGTGAATCTTGAAGGATTCACTGCTGGGCTGGATAAGAATCTTGTTGGTGATTTCCTAGGAAATCATGATGAATTCTGTGTTCCGGTTCTTCATGAATTTTCTGGAACATTTGATTTCCATGACATGAATTTAGATACTGCCCTGTGTCTATTTTTGGAGACTTTCAGACTGCCTGGAGAATCGCAGAAGATACAGAGTGTGCTTGAAGCTTTCTCTCAGAGATATTATGCGGAGTCACCACATATCCTAGCCAACAAGGATGCTGCTCTCGTGTTATCATACTCAATTATAATGCATAATACAGATCAGCATAACGTGCAGGTCAAAAAGAAGATGACAGAAGAGGATTTTATCAGGAATAATAGGCGAATAAATGGTGGCAATGATCTGCCCCGAGAATTCCTGTCAGAGCTTTACCATTCAATTTGTAAGAATGAAATCTGTACTACTCCTCAGCAAGGTGTTGGGTTTCCTGAAATGACCCCAAGTTGCTGGATTGATCTAATGCACAAGTCGAAGAAAACTGCTCCATTTATTGTATCTGATTACAAAGCCTACCTCAATCATGATATGTTTGCTATAATGTCAGGCCCAACAATGGCTGCCATCTTTGTGGTATTTGACCATGCTGAAGATGAAGAGTTATACCAAACATGTATGGATGGATTCTTGGCTGTTGCAAAGATTTCAGCGTGTCATCATCTTGAAGATGTTCTGGATGATCTGGTATTGTCTCTCTGCAAGTTCACTACTCTTTTGAACCCGTCTTCAGTTGAAGAACCAGTCCTTGCCTTTGGAGATGACGTGAAAGCAAGAATGGCAACTGTGACAGTTTTCACGATTGCAAATAGGTATGGTGATTACATACGCACAGCTGATGAATCACAGCTTTCTGTTGAAACTGGGCATGGTAAGCCTATTGCAAATTCTTTATCATCAGCTCAAATGCCACCTATTGGTACCCCAAGGAGATCCTCAGGGTTGATGGGCAGGTTTAGTCAACTCTTATCTCTAGACACTGAAGAGCCAAGATCACAACCTACTGAACAACAACTTGCTGCTCATCAGCGCACCCTACAGACAATACAGAAATGTCACATCAACAGCATATTCACTGAGAGTAAATTTCTGCAAGCTGAATCTTTATTGCAGCTTGCAAGAGCACTCATTTGGGCTGCAGATCGACCTCAGAAAGGGAACGGCACTCCTGATGATGAAGATACAGCAGTTTTCTGCCTGGAGTTGCTGACTGCAATTACTTTGAATAACAGGGATAGAATTGTGCTTCTTTGGCACGGTGTGTATGAACATATATCCAATATTGTTCAGTCAACTGTAATGCCTTGTGTTCTGGTAGATAAGGCTGTTTTTGGACTCCTGAAGATTTGCCAGCGGTTGCTTCTTGCCGATGAACTTCTGAGGTCATTGCAAATTGTATTGAAGCTTGATGCCCGAGTTGCTGATGCATACAGTGAGCAGATTACACTAGAGGTCAGTCACCTTTTGAAGGCCAATGCTGCTCATATCAGGTCTCAGTTAGGCTGGCGTACCATTACATCACTCCTTTCCAACATAGCTAGACACCTAGAAGCATATGAGACTGGATTTGAAGCCCTACTGTTCATAATGTCCAATGGAACCCATTTGATGCCAGCTAATTATGTTCTCTGTGTAGATGCCGCAAGGCAGTTTGCTGAATCTCCGGTTGGACAGGCAGAGCGTTCTGTACAGGCAATAGATCTCATGGCAGGGTGTGTCAATTGCTTGGCACAGTGGACTACTGAAGCTAAGGAAGCAATGGAGCAGGAGCAAGTGTCTAGGTTGTACCAGGATATTGGAGAGATGTGGCTAAGGCTTGTGCAAGGACTAAGGAAAGTATGTTTGGACCAGAGAGAAGAGGTTCGAAATCATGCTTTGTTATCTTTGCAGAGGTGCTTGACAGGAGCTAATGGGATTCATCTCCTTCATGGTTTGTGGTCACAGTGTTTTGATCTGGTGATCTTCACTGTGCTTGATGACCTGCTTGAAATTGAACACAGTCACTCTCAAAAGGATTACCGCAACATGGGAGGCACACTTATCTTGGCCATGAAGCTCTTTTCTAAAGTTTTTGTTCAATTACTCCAAGATTTATCACAATTGACAGCCTTCTGCAAATTATGGTTAGGTGTACTGAGCCGAATGGAAAAGTATATGAAGGTGAAAGTTCGGGGAAAAAGAAGTGAGAACCTTCAAGAGTTAGTGCCTGAGCTGCTTAAGAACATCTTGCTTGTTATGAAAACAAAGGTCATACTGGTGCAGAGGAGTGCCTTAGGTGGTGATAGTTTGTGGGAACTGACTTGGCTACATGTGAATAACATTGCTCCGTCATTGCAGGGTGAGGTGTTCCCTGAACAGGATTCTGACCATTTGCAGCACAAACAGGGAGAATCATTAGCAGGAAGTTTTGATGCCTGA 3003 0.4222 MYLSLPLINSAIELGGPSICCHPRLLNLIQDELLRNLMQFGLSMNPLILSMVCSIILNLYHHLRTELKLQLEAFFFLCNFETSTKQISRYGASYQQQEVAMEALVDFCRQKTFMVDMYANFDCDITCSIVFEDLANLLSISAFPVNCPLSSTHILALDGLIAVIQGMAERIGNGSLSSEHSPVNLEGFTAGLDKNLVGDFLGNHDEFCVPVLHEFSGTFDFHDMNLDTALCLFLETFRLPGESQKIQSVLEAFSQRYYAESPHILANKDAALVLSYSIIMHNTDQHNVQVKKKMTEEDFIRNNRRINGGNDLPREFLSELYHSICKNEICTTPQQGVGFPEMTPSCWIDLMHKSKKTAPFIVSDYKAYLNHDMFAIMSGPTMAAIFVVFDHAEDEELYQTCMDGFLAVAKISACHHLEDVLDDLVLSLCKFTTLLNPSSVEEPVLAFGDDVKARMATVTVFTIANRYGDYIRTADESQLSVETGHGKPIANSLSSAQMPPIGTPRRSSGLMGRFSQLLSLDTEEPRSQPTEQQLAAHQRTLQTIQKCHINSIFTESKFLQAESLLQLARALIWAADRPQKGNGTPDDEDTAVFCLELLTAITLNNRDRIVLLWHGVYEHISNIVQSTVMPCVLVDKAVFGLLKICQRLLLADELLRSLQIVLKLDARVADAYSEQITLEVSHLLKANAAHIRSQLGWRTITSLLSNIARHLEAYETGFEALLFIMSNGTHLMPANYVLCVDAARQFAESPVGQAERSVQAIDLMAGCVNCLAQWTTEAKEAMEQEQVSRLYQDIGEMWLRLVQGLRKVCLDQREEVRNHALLSLQRCLTGANGIHLLHGLWSQCFDLVIFTVLDDLLEIEHSHSQKDYRNMGGTLILAMKLFSKVFVQLLQDLSQLTAFCKLWLGVLSRMEKYMKVKVRGKRSENLQELVPELLKNILLVMKTKVILVQRSALGGDSLWELTWLHVNNIAPSLQGEVFPEQDSDHLQHKQGESLAGSFDA 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2950 1000 CDD Sec7 189 329 IPR000904 GO:0005085|GO:0032012
Ssu6g2950 1000 SMART sec7_5 98 329 IPR000904 GO:0005085|GO:0032012
Ssu6g2950 1000 PANTHER PATTERN FORMATION PROTEIN GNOM PROTEIN 4 189 - -
Ssu6g2950 1000 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 4 189 - -
Ssu6g2950 1000 SUPERFAMILY Sec7 domain 189 331 IPR035999 GO:0005085|GO:0032012
Ssu6g2950 1000 PANTHER PATTERN FORMATION PROTEIN GNOM PROTEIN 188 473 - -
Ssu6g2950 1000 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 474 995 - -
Ssu6g2950 1000 ProSiteProfiles SEC7 domain profile. 156 327 IPR000904 GO:0005085|GO:0032012
Ssu6g2950 1000 MobiDBLite consensus disorder prediction 482 509 - -
Ssu6g2950 1000 PANTHER PATTERN FORMATION PROTEIN GNOM PROTEIN 474 995 - -
Ssu6g2950 1000 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 188 473 - -
Ssu6g2950 1000 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 3 128 IPR032691 -
Ssu6g2950 1000 Gene3D - 179 221 - -
Ssu6g2950 1000 Gene3D - 222 338 IPR023394 -
Ssu6g2950 1000 MobiDBLite consensus disorder prediction 482 502 - -
Ssu6g2950 1000 Pfam Sec7 domain 189 329 IPR000904 GO:0005085|GO:0032012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2950 Ssu-Chr6 67859693 67862984 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2950 K18443 - gmx:100789153 1352.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2950 6 67859693 67862984 Ssu9g1510 9 50880144 50885345 PCT