Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2856 ATGGCTCTGTTTTCCGCTGTTTCACTCTGTCCACTCTGCatgcttctcttcttcttcttctccactTCCTCCTCCGCCAAGCTCAACCACGTCACCGACTCACCCTCACTCTCCTTCCCTCTCACCTCGCTTCCCCTCTCCACGGCAAAGCCTGCCAATAGCAACCCAAAACTGAGAACCCTCTCCTCTTCTTCCTACAGCGTGAAATCCTCGTTCAAGTACTCGATGGCCCTGGTGGTGACCCTCCCGATAGGGACTCCTCCGCAGCAGCAGCAGATGGTGTTGGACACGGGAAGCCAACTCTCGTGGATCCAGTGCCACAACAAAACCCCCCCAACGGCGTCGTTCGACCCCTCCCTCTCCTCTTCCTTCTACGTCCTCCCCTGCACCCACCCCCTCTGCAAACCCCGCGTCCCCGACTTCACCCTCCCCACAACCTGCGACCAGAACCGCCTCTGCCACTACTCCTACTTCTACGCCGACGGCACCTACGCCGAGGGCAACCTCGTCCGCGAAAAAATATCCTTCTCCCCTTCCCAAACTACCCCTCCCCTAGTCCTCGGTTGCGCCACCCACTCCGGCGACGCCAGGGGCATTCTCGGAATGAACCTCGGCCGCTTCTCCCTCCCCTCCCAAGCCAAAATCACCAAATTCTCCTACTGCGTCCCCGCCCGACAATCCGCACCCGGGAACCTCCCGACAGGGTCGTTCTACCTCGGGAACAACCCGAATTCCCCGCGCTTCCGTTACGTCAACATGTTGACCTTTTCTCCAAGTCAACGCATGCCGAACTTGGACCCCTTGGCCTACACCCTCCCCATGCAAGGAATAAGAATCGGCGGGAGAAAGCTCGACATCCAACCCTCCGTTTTTCGGCCCAACGCCGGCGGGTCGGGTCAGACCATGCTCGACTCCGGATCCGAGTTCACGTTCCTCGTCGACGCCGCTTACGACAGGGTGCGGGAAGAGGTAAATAGAGCGGTGGGGAATAGGATTAAGAAGGGGTACGTGTACGGTGGCGTGGCGGACTTGTGTTTTGATTCGGACGCCGCGGCGATCGGACGGTTGATAGGGGACGTGGTGTTCGAGTTCGAGAGAGGCGTGGAGATCGTGGTTCCGAAAGAGAGGGTGCTCGCTTACGTGGGCGGTGGGGTCCACTGCGTGGGAATCGGAAGGTCCGAAAGATTGGGTACGGCCAGCAACATTATTGGCAACTTCCATCAGCAGAATCTGTGGGTGGAGTTTGATCTCGCCAATCGCAGAGTGGGTTTCGGTGAGGCCGATTGTAGCAGATTGGCCAAGTAA 1305 0.5778 MALFSAVSLCPLCMLLFFFFSTSSSAKLNHVTDSPSLSFPLTSLPLSTAKPANSNPKLRTLSSSSYSVKSSFKYSMALVVTLPIGTPPQQQQMVLDTGSQLSWIQCHNKTPPTASFDPSLSSSFYVLPCTHPLCKPRVPDFTLPTTCDQNRLCHYSYFYADGTYAEGNLVREKISFSPSQTTPPLVLGCATHSGDARGILGMNLGRFSLPSQAKITKFSYCVPARQSAPGNLPTGSFYLGNNPNSPRFRYVNMLTFSPSQRMPNLDPLAYTLPMQGIRIGGRKLDIQPSVFRPNAGGSGQTMLDSGSEFTFLVDAAYDRVREEVNRAVGNRIKKGYVYGGVADLCFDSDAAAIGRLIGDVVFEFERGVEIVVPKERVLAYVGGGVHCVGIGRSERLGTASNIIGNFHQQNLWVEFDLANRRVGFGEADCSRLAK 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2856 434 SUPERFAMILY Acid proteases 79 432 IPR021109 -
Ssu6g2856 434 Gene3D Acid Proteases 237 434 IPR021109 -
Ssu6g2856 434 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 12 432 - -
Ssu6g2856 434 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 93 104 IPR001969 GO:0004190|GO:0006508
Ssu6g2856 434 PANTHER ASPARTYL PROTEASE-RELATED 12 432 IPR001461 GO:0004190|GO:0006508
Ssu6g2856 434 Pfam Xylanase inhibitor C-terminal 269 425 IPR032799 -
Ssu6g2856 434 Pfam Xylanase inhibitor N-terminal 79 235 IPR032861 -
Ssu6g2856 434 CDD pepsin_A_like_plant 79 429 IPR034161 -
Ssu6g2856 434 Gene3D Acid Proteases 52 235 IPR021109 -
Ssu6g2856 434 ProSiteProfiles Peptidase family A1 domain profile. 78 425 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2856 Ssu-Chr6 66301716 66303020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2856 80 434 Miscellaneous Gene Families AT1G44130 22.084 3.09e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2856 - - gmx:100796435 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1437 9 49381405 49381887 Ssu6g2856 6 66301716 66303020 PCT