Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2805 ATGGCAGACCCTCAGAAAATTCACCCTGTCCATGATGTTGAGGCACCAAACCACCCTTCAGCACCGTTGGTGCCAAGGAGCATGTCCAAGTCTGATGCACGTGATCCAGAGAGAGTGGACCAACAACACCCTCCACAAAGCACCATTCCTGTGATGCATTCCAAGCCaccaaagaaaagaagaagctgCTGCTGCAGGTTTTTCTGTTGGACAATAAGCATATTGCTGATTCTGATTGTGGCCATTGGCATCACCATAGGGATACTATACCTTGTGTTCAGACCAAAGCTTCCAAAATACTCGGTGGACGAACTTGGAGTCACCCAGTTTAATCTTGCTGACAACGACAGTTTATCTGTGACATTCAACTTGACAATCACTGCTAGAAACCCAAACAAGAAGATTGGAATAGACTATAGGGGTGGCAGCCACATAAGTGCTTGGTACTTGGACACAAAACTATGTGAAGGGTCTTTGCCAAAATTTTACCAAGGTCACCACAACACCACAGTGCTAAGCATCCCTCTCACAGGGCAAACACAGAATGCTACTGGCTTGCAAAGTACCCTTCAGCAGCAGCTGCAACAAACAGGTAACGTGCCCCTCAATTTGAAGGTCAAGCAGCCTGTGAGGATCAAGCTTGGGAAGTTGAAACTGTTCAAAATCAAGTTCAGGGTTAGGTGCAGGATTGTGGTGGACAGCCTTGATGCTAATAATTCTATCAGAATTAGGAGCAGTAGCTGTAAATTCAGGTTTAGGCTGTGA 765 0.4497 MADPQKIHPVHDVEAPNHPSAPLVPRSMSKSDARDPERVDQQHPPQSTIPVMHSKPPKKRRSCCCRFFCWTISILLILIVAIGITIGILYLVFRPKLPKYSVDELGVTQFNLADNDSLSVTFNLTITARNPNKKIGIDYRGGSHISAWYLDTKLCEGSLPKFYQGHHNTTVLSIPLTGQTQNATGLQSTLQQQLQQTGNVPLNLKVKQPVRIKLGKLKLFKIKFRVRCRIVVDSLDANNSIRIRSSSCKFRFRL 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2805 254 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 19 252 - -
Ssu6g2805 254 SUPERFAMILY LEA14-like 81 211 - -
Ssu6g2805 254 MobiDBLite consensus disorder prediction 1 59 - -
Ssu6g2805 254 Pfam Late embryogenesis abundant protein 125 229 IPR004864 -
Ssu6g2805 254 PANTHER EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN, PUTATIVE-RELATED 19 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2805 Ssu-Chr6 65125851 65126615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2805 44 242 EF-hand Containing Proteins AT5G21130 31.683 3.46e-32 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2805 - - gmx:100782663 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2805 6 65125851 65126615 Ssu6g2805 6 65125851 65126615 ECH
Ssu9g1362 9 48108179 48108907 Ssu6g2805 6 65125851 65126615 PCT