Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2642 ATGACCACCACAACTAGACACTCCTCTCGTAATAAAATACCTAAACAACACTTCAAAGTCTGTTTTTGTTTCAAGAGAATGTTTAGGCTCAAAGCGGCTGAACCTCCTGAGGAAATCGAAGGTGTTTTTAATGCCTACTCAAAAAATGGCATCATGAGCATGGATGACCTGTATGATTTCTTAGTTGAATTTCAAGGAGAAGATGAAGGTGATGCCACCAATAAACATGCTCAAGCCATTTTTGACAGTCTCAAGCATCTCAACATATTTCAAAGGAAAGGCCTTCATGTTGATGCCTTCTTCCGTTATCTCTTAAGTGACCTTAATGGTCCCCTTGCtgagGTGCACCATGACATGAATTTTCCGTTGGCTCATTATTTCTTATACACAAGCCACAACTCCTACTTAACTGGAAATCAAGTTAGCAGCGCTAGCAATACTTCCGCGATAATAAATGCATTGAAGAAAGGAGTTAGAGTAATTGAGCTAGATTTATGGCCAAATTCCAGAGGCGATGATGTGCTAGTTCATCATGGAGGGACTCTGACTTCTTCAGTGAAACTCATACCTTGTCTAAATGCGATTAAGGAATATGCTTTTTTCGCCTCTCTATATCCTgttattataacttttgaagACCATATAACTCGACCTCTTCAAGCCAAAGTGGCCAAGaTGGTCGATGACATATTTGGAGATATACTATATCGCCCTGAACATTCACAACAAATGAGGGAATTCCCTTCTCCAGAACAATTGAAGGGAAAAATTCTGATTTCAACTAAACCACCAGAGTATCTTGAAAATCAGGGCCAGAGGACACAAGAGGAAGAAGCACAGAGGCTTGAGGACAAAGATGACGAATTTAGAGTCAATTACaaggATGATTCAGATTGGCAGAATGAGGTGGATGATACTCTAGAATATAGGGATTTGATTTCCATTCATGCAGGGAAGCCAAAAGGTAAGTTAAAACACTGGCTGATTGATCATGATCAAGTCAGGCGTCTTAGCTTAAGTGAGCAAGAGGTTGAAGATATTGCCAAAAATCATGGAACTGACATTGTCAGATTCACCCAAAGAAATTTGCTTAGAATATATCCAAAGGGTACTCGTCTGGACTCATCTAATTACGATCCCATGATTGGATGGATGCATGGAGCTCAAATGGTAGCATTTAATATGCAGgGAGGTGGACACTTTCTTAGGTACATGGAAGGAATGTTCAGAGCCAATGGCGGATGTGGTTATGTTAAGAAACCAGACATACTATTGAATATCAGTCCCAATAATGAGGTTTTTGATCCAAGAGCAGCCCGACCAATCCAGCAAATTCTTCAGGTTTTGGTATACATGGGTGACGGGTGGCGTTCAGATTTCAGGCCAACACACTTCGATTTTTATTCTCCTCCTGACTTCCGTGTGAAGGTTGGTATTCATGGTGTCCCAGTTGATACAAATAGACAATATACTAGGACAATTGAAGATGATTGGATACCAGTATGGAATGAGGAGTTCAGCTTTCCATTGACTATTCCAGAATTGGCCCTTTTGTATATCAAAGTTATTGAGCGTGACTTTTCTGGGAGACATGATTTTGGTGGACAAACATGTTTACCTGTGTCTCAGTTAAGACAAGGCATTCGTGCAGTTCGTTTGCGTAACCACAAGGGTGAACTTTACAAGTCTGTAAGGCTTCTGAtccaatttcattttattgataacCCTGCATAG 1734 0.3956 MTTTTRHSSRNKIPKQHFKVCFCFKRMFRLKAAEPPEEIEGVFNAYSKNGIMSMDDLYDFLVEFQGEDEGDATNKHAQAIFDSLKHLNIFQRKGLHVDAFFRYLLSDLNGPLAEVHHDMNFPLAHYFLYTSHNSYLTGNQVSSASNTSAIINALKKGVRVIELDLWPNSRGDDVLVHHGGTLTSSVKLIPCLNAIKEYAFFASLYPVIITFEDHITRPLQAKVAKMVDDIFGDILYRPEHSQQMREFPSPEQLKGKILISTKPPEYLENQGQRTQEEEAQRLEDKDDEFRVNYKDDSDWQNEVDDTLEYRDLISIHAGKPKGKLKHWLIDHDQVRRLSLSEQEVEDIAKNHGTDIVRFTQRNLLRIYPKGTRLDSSNYDPMIGWMHGAQMVAFNMQGGGHFLRYMEGMFRANGGCGYVKKPDILLNISPNNEVFDPRAARPIQQILQVLVYMGDGWRSDFRPTHFDFYSPPDFRVKVGIHGVPVDTNRQYTRTIEDDWIPVWNEEFSFPLTIPELALLYIKVIERDFSGRHDFGGQTCLPVSQLRQGIRAVRLRNHKGELYKSVRLLIQFHFIDNPA 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2642 577 Pfam Phosphoinositide-specific phospholipase C, efhand-like 37 107 IPR015359 -
Ssu6g2642 577 SUPERFAMILY EF-hand 10 116 IPR011992 -
Ssu6g2642 577 Pfam C2 domain 471 547 IPR000008 -
Ssu6g2642 577 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 1 15 572 - -
Ssu6g2642 577 Gene3D - 34 115 - -
Ssu6g2642 577 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 442 573 IPR035892 -
Ssu6g2642 577 SMART C2_3c 445 553 IPR000008 -
Ssu6g2642 577 SMART plcx_3 117 262 IPR000909 -
Ssu6g2642 577 MobiDBLite consensus disorder prediction 264 284 - -
Ssu6g2642 577 CDD C2_PLC_like 444 572 - -
Ssu6g2642 577 Pfam Phosphatidylinositol-specific phospholipase C, X domain 119 262 IPR000909 -
Ssu6g2642 577 Gene3D C2 domain 441 576 IPR035892 -
Ssu6g2642 577 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 338 424 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Ssu6g2642 577 SUPERFAMILY PLC-like phosphodiesterases 117 426 IPR017946 GO:0006629|GO:0008081
Ssu6g2642 577 ProSiteProfiles C2 domain profile. 419 555 IPR000008 -
Ssu6g2642 577 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 337 422 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Ssu6g2642 577 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 117 262 - -
Ssu6g2642 577 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 15 572 IPR001192 GO:0035556
Ssu6g2642 577 SMART plcy_3 309 425 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Ssu6g2642 577 Gene3D Phosphatidylinositol (PI) phosphodiesterase 116 438 IPR017946 GO:0006629|GO:0008081
Ssu6g2642 577 PRINTS Phospholipase C signature 122 140 IPR001192 GO:0035556
Ssu6g2642 577 PRINTS Phospholipase C signature 246 263 IPR001192 GO:0035556
Ssu6g2642 577 PRINTS Phospholipase C signature 384 402 IPR001192 GO:0035556
Ssu6g2642 577 PRINTS Phospholipase C signature 363 384 IPR001192 GO:0035556
Ssu6g2642 577 PRINTS Phospholipase C signature 148 168 IPR001192 GO:0035556
Ssu6g2642 577 PRINTS Phospholipase C signature 539 549 IPR001192 GO:0035556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2642 Ssu-Chr6 61581427 61593537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2642 13 573 Acyl Lipid Metabolism Gene Families AT3G55940 52.623 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2642 K05857 - gmx:100817915 1008.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2642 6 61581427 61593537 Ssu6g2642 6 61581427 61593537 ECH
Ssu6g2642 6 61581427 61593537 Ssu6g3037 6 69554415 69559137 ECH