Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2513 ATGGACAAAACCGACAAAAACTCAGCGGCGTACGACATCGTTTTGCAGGTGGCTATGGTCCTGGTGATGGTCTTCTCCTACCTCTTCATGCACGACGTGCCCAAGAAGCTGTGGGCCAAGCTCCGCCTGCAGAACCGCGCCGACATCCAAGCGAAGCGCCACTTCGTGGAAGGAGCCCAGCTCCTGGCCCGGGCCCAGTCCTCCAAGTCCCGGGCCCTGGCCAAGGAGGCCCAAGCCCAGGCCCAGCGGGCCATCTCCCTCGACCCCCGCGACGCCGCCCCTTACATCCTCAAAGCCCTCGCCCTCGATTTGCAGGGCCTCCGCTCCGCCGCCCTCGACTCGCTCGACGAATCGCTCTCCCCCCTCGCCGCCAAGTCCCTCTCGGACTCGGAGCGAGGGGACGCGCTCCTCAAGAGGGCCGAGTTGAGACTCGGCACTAGCCAGCGCGGCCGAGTCGACTCGGCCCTCGCCGACTTGGAGGAGTCCGTGAAACTCAGCCCCGGCAATGCCAAGGCCTTTTTCGCGCTGGGAGAGTGCTACGAGCGGAAGAAGATGAACGACGACGCCCTTAAGGCCTACCAGCAGGCTCTCGAGTTGGAACCCCAATTGCCTGCGGCCCAACAAGCCCTCAACAGGTTGGATTCTTCGCCCAAGAACAACTAA 663 0.638 MDKTDKNSAAYDIVLQVAMVLVMVFSYLFMHDVPKKLWAKLRLQNRADIQAKRHFVEGAQLLARAQSSKSRALAKEAQAQAQRAISLDPRDAAPYILKALALDLQGLRSAALDSLDESLSPLAAKSLSDSERGDALLKRAELRLGTSQRGRVDSALADLEESVKLSPGNAKAFFALGECYERKKMNDDALKAYQQALELEPQLPAAQQALNRLDSSPKNN 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2513 220 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 10 213 - -
Ssu6g2513 220 Pfam Tetratricopeptide repeat 170 202 IPR001440 GO:0005515
Ssu6g2513 220 PANTHER - 10 213 - -
Ssu6g2513 220 ProSiteProfiles TPR repeat profile. 170 203 IPR019734 GO:0005515
Ssu6g2513 220 Gene3D Tetratricopeptide repeat domain 34 217 IPR011990 GO:0005515
Ssu6g2513 220 ProSiteProfiles TPR repeat region circular profile. 170 202 - -
Ssu6g2513 220 SUPERFAMILY TPR-like 75 210 IPR011990 GO:0005515
Ssu6g2513 220 SMART tpr_5 170 203 IPR019734 GO:0005515
Ssu6g2513 220 SMART tpr_5 58 91 IPR019734 GO:0005515
Ssu6g2513 220 SMART tpr_5 133 169 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2513 Ssu-Chr6 59178534 59179196 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2513 - - gmx:100809739 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2513 6 59178534 59179196 Ssu6g2513 6 59178534 59179196 ECH
Ssu6g2513 6 59178534 59179196 Ssu1g3156 1 82580001 82580663 PCT