Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3156 ATGGAGCAGGACGAGAAGCAAGCAATGATTCGCGACATCGCCTTACAAGTGGTTCTCATCCTCCTCGCCATCCTCGCCTTCCTGGCCACGCACGGCGTCCCCCAGCGCCTCTTCGCCAAGCTCCTCCACCGTCCCCCAAACCCGCGCGCCGTCCAAGCCAAACGCCACTTCGTCACAGGGGCCCAGCTCCTCGCCGAGGCCCGAAGATCCCCCTCCAACTCCGCCTCCCTCGCCAAACAGGCCCTCGCCGAGGCCGAAAGCGCCATCGCCCTCGACCCCAAGGACGCCGCCTCTCACCTCCTCAAGTCCATGGCGCTCGACCTCCAGGGCTTCCGCGGCAACGCGCTCGAAGCGCTCGACGCCGCGCTGTCCCCGCTCGCCGCCGGGTCCCTCGCCGACGACGAGCGAGGCGACGCGCTCCTGAAGAGAGCGGAGCTGAAAATCAAAACCAGCGAGCGCCGCCGCGTTGACTCGGTGCTGGCGGATTTGACCGAGTCGGTGAAGCTGAGTCCGAGAAACGCGAAAGCGTGGCGCATGTTGGGGGAATGCTACGAGGGGAACAAGATGGGAGAGGAAGCGAAAAAGGCTTATAAGGAGGCTCTCGAGTTGGAGCCACAATTGAATGTGGCTCAGGAAGCGCTCAACAGGTTGGGTTCGTCGTAG 663 0.6425 MEQDEKQAMIRDIALQVVLILLAILAFLATHGVPQRLFAKLLHRPPNPRAVQAKRHFVTGAQLLAEARRSPSNSASLAKQALAEAESAIALDPKDAASHLLKSMALDLQGFRGNALEALDAALSPLAAGSLADDERGDALLKRAELKIKTSERRRVDSVLADLTESVKLSPRNAKAWRMLGECYEGNKMGEEAKKAYKEALELEPQLNVAQEALNRLGSS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3156 220 SUPERFAMILY TPR-like 79 212 IPR011990 GO:0005515
Ssu1g3156 220 Pfam Tetratricopeptide repeat 174 206 IPR013105 -
Ssu1g3156 220 ProSiteProfiles TPR repeat profile. 174 207 IPR019734 GO:0005515
Ssu1g3156 220 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 10 217 - -
Ssu1g3156 220 SMART tpr_5 174 207 IPR019734 GO:0005515
Ssu1g3156 220 Gene3D Tetratricopeptide repeat domain 40 220 IPR011990 GO:0005515
Ssu1g3156 220 PANTHER - 10 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3156 Ssu-Chr1 82580001 82580663 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3156 - - gmx:100783725 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2513 6 59178534 59179196 Ssu1g3156 1 82580001 82580663 PCT