Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2508 ATGGCTTCGAATTCCGAGCTGGTGCGAGCCGTTGTTGAGTCGGTGCTGGGCGTTTCGGTTTCGGATTCGGTGCTGGTGATCGTGACCACTTCCGTGGCCTTGGTGATTGGGCTTCTCGTGTTCGCGTGGAAGAAATCTTCGGATCGGAGCAAGGAGCAGAGGCCGCTCGCGGTGCCGAGGTTGCTGGTgaaggaagaggaagatgaaGTCGATGTTGGTTCCGGGAAGACCAGGGTTGCCATTTTCTTTGGAACTCAGACTGGTACCGCCGAGGGCTTTGCCAAGgcTTTGGCAGAGGAGATCAAGGCAAGGTATGAAAAAGCTGCTGTGAAAGTTGTTGACCTGGATGACTATGCAATGGATGATGATCAGTATGAGGAGAAGCTGAAGAAAGAGTCACTTGCATTGTTCATGTTGGCAACATATGGAGATGGAGAGCCAACTGACAATGCTGCAAGATTCTACAAATGGTTTACTGAGGGTAAAGATGAGAGGGGTACTTGGCTTGTACAGCTCACATATGGTGTTTTTGGCTTAGGTAACAGGCAATATGAACATTTTAATAAGATAGGTAAAGTAGTTGATGAAGAACTTAGTGAACAAGGTGCAAAGCGTCTTGTTCCATTGGGGCTAGGTGATGATGATCAATCCATTGAGGATGATTTTGTTGCTTGGAAGGAATCTCTATGGCCTGAGTTGGATCAGTTGCTCCGAGATGAGGATGACGTAAATACTGTCTCTACTCCTTATAAGGCTGCTATTCCTGAATATCGAGTGGTTATTCATGATTCCACTGTCACATCTTGCAATGATAATCACTTGAATGTGGCAAACGGGAATGCTGTGTTTGATATTCACCATCCTGGCATAATATATGAAACTGGTGACCATGTGGGTGTTTTTGCTGAAAACTCTGGTGAAACTGTTGAAGAAGCTGGAAAGTTGTTGGGTCAGGATTTAGATTTGTTGTTTTCCCTTCATACTGATAATGAGGATGGTACTACTCTTGGAGGTTCTCTGCCACCTCCTTTCCCTGGCCCGTGCACACTGCGCTTTGCTTTAGCACATTATGCAGATGTCTTGAACCCCCCACGCAAGGCTGCTTTAGTTGCTCTGGCTGCACATACTTCGGAACCTAGTGAAGCAGATAGATTAAAGTTCCTCTCATCTCCTCAGGGGAAGGATGAATACTCCAAATGGGTTGTTGGAAGTCAGAGAAGTATCCTTGAGGTAATGGCTGAGTTCCCATCAGCAAAACCACCCCTTGGTGTTTTTTTTGCTGCAGTAGCACCTCACTTACAACCTCGTTATTATTCTATTTCATCCTCACCTAGGTTTGCTCCCCAAAGAGTACATGTAACTAGTGCCTTGGTGTGTGGTCCAACTCCTACTGGAAGAATTCACAAAGGAGTATGTTCAACCTGGATGAAGAATGCTATTCCCTTAGAGAAAAGTCGTGACTGTAGTTGGGCTCCTATTTTTATCAGAACATCAAACTTCAAGTTACCAGTTGATCATTCCATTCCTATTATTATGGTTGGTCCTGGTACTGGCTTGGCACCTTTCAGGGGATTTTTACAGGAAAGATTGGTCCTCAAAGAGGATGGCATTCAACTTGGTCCTGCATTACTCTTCTTTGGATGTAGGAATCGTCAAATGGATTTTATTTACGAGGATGAGCTAAAGCATTTTGTGGAACAAGGTGCTCTGTCAGAGTTGATAGTCGCCTTCTCGAGAGAGGGACCTGAAAAGGAGTATGTTCAACACAAGATGATGGATAAAGCAGCAAATTTGTGGAATTTGATTTCTCCGGGAGGTTATCTTTATGTCTGTGGTGATGCTAAGGGTATGGCCAGAGATGTTCATCGGACTCTTCATATCATTGTCCAGCAGCAGGAAAATGTGGACTCTTCAAAGGCAGAGGCTATAGTGAAAAAACTCCAGATGGATGGACGTTACCTCAGAGATGTCTGGTAA 1977 0.4451 MASNSELVRAVVESVLGVSVSDSVLVIVTTSVALVIGLLVFAWKKSSDRSKEQRPLAVPRLLVKEEEDEVDVGSGKTRVAIFFGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDDQYEEKLKKESLALFMLATYGDGEPTDNAARFYKWFTEGKDERGTWLVQLTYGVFGLGNRQYEHFNKIGKVVDEELSEQGAKRLVPLGLGDDDQSIEDDFVAWKESLWPELDQLLRDEDDVNTVSTPYKAAIPEYRVVIHDSTVTSCNDNHLNVANGNAVFDIHHPGIIYETGDHVGVFAENSGETVEEAGKLLGQDLDLLFSLHTDNEDGTTLGGSLPPPFPGPCTLRFALAHYADVLNPPRKAALVALAAHTSEPSEADRLKFLSSPQGKDEYSKWVVGSQRSILEVMAEFPSAKPPLGVFFAAVAPHLQPRYYSISSSPRFAPQRVHVTSALVCGPTPTGRIHKGVCSTWMKNAIPLEKSRDCSWAPIFIRTSNFKLPVDHSIPIIMVGPGTGLAPFRGFLQERLVLKEDGIQLGPALLFFGCRNRQMDFIYEDELKHFVEQGALSELIVAFSREGPEKEYVQHKMMDKAANLWNLISPGGYLYVCGDAKGMARDVHRTLHIIVQQQENVDSSKAEAIVKKLQMDGRYLRDVW 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2508 658 Pfam FAD binding domain 283 475 IPR003097 GO:0016491
Ssu6g2508 658 SUPERFAMILY Flavoproteins 75 238 IPR029039 -
Ssu6g2508 658 Pfam Flavodoxin 81 225 IPR008254 GO:0010181
Ssu6g2508 658 Pfam Oxidoreductase NAD-binding domain 512 622 IPR001433 GO:0016491
Ssu6g2508 658 ProSiteProfiles Flavodoxin-like domain profile. 79 230 IPR008254 GO:0010181
Ssu6g2508 658 SUPERFAMILY Riboflavin synthase domain-like 282 500 IPR017938 -
Ssu6g2508 658 Gene3D Translation factors 283 501 - -
Ssu6g2508 658 PRINTS Flavodoxin signature 80 93 IPR001094 GO:0010181
Ssu6g2508 658 PRINTS Flavodoxin signature 195 214 IPR001094 GO:0010181
Ssu6g2508 658 PRINTS Flavodoxin signature 171 181 IPR001094 GO:0010181
Ssu6g2508 658 PRINTS Flavodoxin signature 136 147 IPR001094 GO:0010181
Ssu6g2508 658 Gene3D - 502 658 IPR039261 -
Ssu6g2508 658 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 247 503 IPR017927 GO:0016491
Ssu6g2508 658 PANTHER NADPH--CYTOCHROME P450 REDUCTASE 283 658 - -
Ssu6g2508 658 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 540 549 IPR001709 GO:0016491
Ssu6g2508 658 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 607 615 IPR001709 GO:0016491
Ssu6g2508 658 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 553 564 IPR001709 GO:0016491
Ssu6g2508 658 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 470 479 IPR001709 GO:0016491
Ssu6g2508 658 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 292 302 IPR001709 GO:0016491
Ssu6g2508 658 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 436 443 IPR001709 GO:0016491
Ssu6g2508 658 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 511 530 IPR001709 GO:0016491
Ssu6g2508 658 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 584 600 IPR001709 GO:0016491
Ssu6g2508 658 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 499 658 IPR039261 -
Ssu6g2508 658 CDD CYPOR 283 658 - -
Ssu6g2508 658 PANTHER NITRIC OXIDE SYNTHASE-RELATED 283 658 - -
Ssu6g2508 658 PANTHER NITRIC OXIDE SYNTHASE-RELATED 7 282 - -
Ssu6g2508 658 Gene3D - 48 248 IPR029039 -
Ssu6g2508 658 PANTHER NADPH--CYTOCHROME P450 REDUCTASE 7 282 - -
Ssu6g2508 658 Gene3D - 302 434 IPR023173 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2508 Ssu-Chr6 59083776 59097353 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2508 K00327 - gmx:547712 1187.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2508 6 59083776 59097353 Ssu6g2508 6 59083776 59097353 ECH
Ssu6g2508 6 59083776 59097353 Ssu1g3160 1 82651661 82659589 PCT