Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3160 ATGGCTTCCAATTCCGATTTGGTGCGCGCCGTTGAGTCGCTGCTCGGCGTTTCGCTCGCCGATTCCGTTTCGGATTCGCTGCTCCTCATCGCGACGACCTCCGCCGCGGTCATAATCGGACTTTTGGTGTTTCTGTGGAAGAAATCTTCGGGTCGGGGCAGGGAGGTGAAGCCGGTGATCGTGCCGAAGTCGTTGCTGAAGGACGAGGACGACGAAGTCGACGTCGCCGCCGGCAAGACTAAGGTCACCGTTTTCTTCGGTACTCAAACCGGCACTGCGGAGGGCTTTGCTAAggcaTTGACAGAGGAGATCAAGGCAAGGTATGAAAAAGCAGCTGTCAAAGTTGTTGACCTGGATGACTATGCAGCGGATGATGATCAATATGAGGAGAAGCTGAAGAAAGAGACTCTTGCATTTTTTATGCTGGCAACTTATGGAGATGGAGAACCAACTGACAATGCTGCAAGATTCTACAAATGGTTTACCGAGGGGAAAGATGAAAGGGGCACCTGGCTTCAACAGCTCACATATGGAGTGTTTGGCCTAGGTAACAGACAATACGAACATTTTAATAAGATATCTTCTTACAGAGCTGTGTTTGCTGCAGGTGCAAAGCGTCTTGTTACACTTGGATTAGGTGATGATGATCAATCCATTGAGGATGATTTTTCTGCCTGGAAAGAAACTTTGTGGCCTGAGTTGGATCAGTTGCTCCGAGATGAGGATGATGCAAATACTGTCTCTACCCCCTATACAGCTGCTATTCTTGAATATCGAGTAGTGAATCATGACCCCACTGTCACATCATCCGACGATAATCACATAAACATGGCAAATGGGAATGCTGTGTTTGATATTCATCATCCTTGCAGggTGAATGTTGCTGTACAAAGGGAGCTTCACAAGCCTGAGTCTGACCGTTCTTGCATACATTTGGAATTTGATATATCAGGGACTGGCATAACATACGAAACTGGAGACCATGTGGGTGTTTATGCTGAGAACTGTGATGAAACTGTTGAAGAAGCTGGGAAGTTGTTGGGTCAGAATTTAGATCTATTGTTTTCTCTTCACACTGATAAGGAGGATGGCACTTCCCTAGGCGGTTCTCTCCTGCCTCCTTTTCCTGGCCCTTGCACACTGCGTACTGCATTAGCACGCTATGCGGATCTCTTGAACCCCCCTCGaaagGCTGCTTTAGCTGCATTAGCTGCTCATGCGTCTGAACCTAGTGAAGCTGAAAGATTAAAGTTCCTTTCATCTCCTCAGGGgaagGATGAGTACTCCAAATGGGTCGTTGGAAGCCAGAGAAGTCTGCTTGAGGTGATGGCTGAGTTTCCATCAGCAAAACCTCCCCTTGGGGTGTTTTTTGCTGCAGTAGCCCCTCGTTTACAGCCTCGTTATTATTCTATTTCATCCTCTCCTAGGTTGTTTGCTCCACAAAGAGTACATGTAACTTGTGCCTTGGTGCATGGTCCAACTCCCACTGGTAGAATTCACAAAGGAGTATGTTCAACCTGGATGAAGCATGCTATTCCCTTAGAGAAAAGTCGCGACTGTAGCTGGGCTCCTATTTTTATTAGGCCATCAAATTTCAAGCTACCAGTTGATCATTCAATTCCTATTATTATGGTTGGACCTGGTACTGGTCTGGCACCTTTCAGGGGATTTTTACAGGAAAGATTTGCCCTCAAAGAAGATGGTGTTCAACTTGGCCCTGCATTACTCTTCTTCGGATGTAGGAATCGTCGAATGGATTTTATTTATGAGGATGAGCTAAAGAATTTTGTGGAACAAGGTTCTGTGTCAGAATTGATAGTTGCATTCTCTAGAGAGGGGTCTGAAAAGGAATATGTTCAACACAAGATGATGGATAAAGCTGCCCACCTGTGGAGTTTAATTTCTCAAGGTTATCTTTACGTCTGTGGTGATGCCAAGGGTATGGCCAGAGATGTTCATCGAACTCTTCATACCATTGTCCAGCAGCAGGAAAACGTGGACTCATCGAAGGCTGAGGCTATAGTGAAAAAACTCCAGATGGATGGACGTTACCTTAGGGACGTCTGGTGA 2070 0.4599 MASNSDLVRAVESLLGVSLADSVSDSLLLIATTSAAVIIGLLVFLWKKSSGRGREVKPVIVPKSLLKDEDDEVDVAAGKTKVTVFFGTQTGTAEGFAKALTEEIKARYEKAAVKVVDLDDYAADDDQYEEKLKKETLAFFMLATYGDGEPTDNAARFYKWFTEGKDERGTWLQQLTYGVFGLGNRQYEHFNKISSYRAVFAAGAKRLVTLGLGDDDQSIEDDFSAWKETLWPELDQLLRDEDDANTVSTPYTAAILEYRVVNHDPTVTSSDDNHINMANGNAVFDIHHPCRVNVAVQRELHKPESDRSCIHLEFDISGTGITYETGDHVGVYAENCDETVEEAGKLLGQNLDLLFSLHTDKEDGTSLGGSLLPPFPGPCTLRTALARYADLLNPPRKAALAALAAHASEPSEAERLKFLSSPQGKDEYSKWVVGSQRSLLEVMAEFPSAKPPLGVFFAAVAPRLQPRYYSISSSPRLFAPQRVHVTCALVHGPTPTGRIHKGVCSTWMKHAIPLEKSRDCSWAPIFIRPSNFKLPVDHSIPIIMVGPGTGLAPFRGFLQERFALKEDGVQLGPALLFFGCRNRRMDFIYEDELKNFVEQGSVSELIVAFSREGSEKEYVQHKMMDKAAHLWSLISQGYLYVCGDAKGMARDVHRTLHTIVQQQENVDSSKAEAIVKKLQMDGRYLRDVW 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3160 689 PRINTS Flavodoxin signature 196 215 IPR001094 GO:0010181
Ssu1g3160 689 PRINTS Flavodoxin signature 139 150 IPR001094 GO:0010181
Ssu1g3160 689 PRINTS Flavodoxin signature 174 184 IPR001094 GO:0010181
Ssu1g3160 689 PRINTS Flavodoxin signature 83 96 IPR001094 GO:0010181
Ssu1g3160 689 ProSiteProfiles Flavodoxin-like domain profile. 82 231 IPR008254 GO:0010181
Ssu1g3160 689 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 287 535 IPR017927 GO:0016491
Ssu1g3160 689 PANTHER NITRIC OXIDE SYNTHASE-RELATED 7 689 - -
Ssu1g3160 689 PANTHER NADPH--CYTOCHROME P450 REDUCTASE 7 689 - -
Ssu1g3160 689 Hamap NADPH--cytochrome P450 reductase [POR]. 22 689 IPR023208 GO:0003958
Ssu1g3160 689 PIRSF P450R 17 689 IPR023208 GO:0003958
Ssu1g3160 689 Gene3D - 56 250 IPR029039 -
Ssu1g3160 689 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 467 474 IPR001709 GO:0016491
Ssu1g3160 689 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 638 646 IPR001709 GO:0016491
Ssu1g3160 689 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 323 333 IPR001709 GO:0016491
Ssu1g3160 689 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 572 581 IPR001709 GO:0016491
Ssu1g3160 689 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 543 562 IPR001709 GO:0016491
Ssu1g3160 689 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 585 596 IPR001709 GO:0016491
Ssu1g3160 689 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 502 511 IPR001709 GO:0016491
Ssu1g3160 689 Pfam FAD binding domain 284 507 IPR003097 GO:0016491
Ssu1g3160 689 Gene3D - 333 465 IPR023173 GO:0016491
Ssu1g3160 689 SUPERFAMILY Flavoproteins 77 239 IPR029039 -
Ssu1g3160 689 Pfam Oxidoreductase NAD-binding domain 544 653 IPR001433 GO:0016491
Ssu1g3160 689 Gene3D - 535 688 IPR039261 -
Ssu1g3160 689 Gene3D Translation factors 289 534 - -
Ssu1g3160 689 SUPERFAMILY Riboflavin synthase domain-like 267 532 IPR017938 -
Ssu1g3160 689 Pfam Flavodoxin 84 226 IPR008254 GO:0010181
Ssu1g3160 689 CDD CYPOR 285 689 - -
Ssu1g3160 689 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 531 689 IPR039261 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3160 Ssu-Chr1 82651661 82659589 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3160 K00327 - gmx:100798676 1233.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2508 6 59083776 59097353 Ssu1g3160 1 82651661 82659589 PCT