Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2506 ATGTTGCAAAGGGCAGCAAGCAACGCATATTCATGGTGGTGGGCCAGCCACATCAGGACAAAGCAGTCAAAATGGCTAGATCAAAGCCTCCAAGataTGGAGGAGAAGGTGGCTGAAACCCTCAACATCCTGTGTGATGAAGGGGACTCATTTGCTAAGAGGGCAGAAATGTATTACAAGAAGAGGCCAGAGCTGGTAAATTTTGTGGAAGAAGCCTTTCGAGCATATAGAGCCTTAGCAGAAAGATATGATCATTTGTCAAAGGAACTCCAAAGTGCCAACCGCACTATAGCCAGTGTCTTCCCAGACCAAGTTCCATGTCaaattgatgaagatgatgaagaagaaagtgACACAGGAACTAATTCATCATCACCAGACCCCACCAATCAAGCACATAATAAACCAACCGTTCCTAAAGTTCCCAAGACCCCAAAGAAGGATTTTAGAAGTCCATCCATGTTGCTCTCCAGAAAGGGCCCACTTAAGAGGACTTCTAGCCCTGCAAATTATGCTCCAACAATTCTAAGTTCAGGTCTGTCCAAGGTTGAAGCCTTAGCAGAAATTGACAAGCTTCAGAAAGAAATACTGGCTCTACAAACTGAGAAAGAGTTTGTGAGGAGTTTGTATGAACGCGCCTATGAAAAGTACTGGGAAATTGAAGACCAGATCACAGCAATGCAGAAAAGAGTTTGCAGCTTGCAAGATGAGTTTGGTGTCGGTACAGTGATAGAAGATAATGATGCTAGATCTTTGATGGCGGCCACAGCTCTAAAATCATGCCAAGAGACCCTCAATAAGTTGCAAGAGATACAAGCACAGTCGTCTAAAGAAGCTAAAGAGGAGTATGAAAGGGTTAAGAAAGCTCATGAGATGTTTGAGACCCTTAGAGACCAATTCATTTCTAAATATGTAAGTCAACAAGACCAAGATGATGGGGACAAGTCTGAGAGTTTAGGAACAGATAAAAAATGCATGGATGAAGAGATGGATCACTTGGAGCATGATGTGGGGGTTTTGAGAGAGAAGATTAAACAAAAGTTGGAGGAAGATTCGAGTAATTCCCTCACTGTGACTGAAATGGCTGAGTGCATTGATGAGCTTGTAAATAAGGTTGTTACATTGGAAACTGCGGTTTCATCTCAGACTGGTTCAGTAAAGAGGCTAAGATCAGAAACAGATGATCTTCAGACAAATATAAGGAAGTTGGAAGAAGACAAGGAAATGCTCATAGAAGGCTCAGAAGTTACCAACCAGAAGCTAAAGAAATTGGAGGAAGAGTTGCAGAGAGTTAAAATGCTCAACCGAAGTGTCATAACTCAAGACAACACCCTTCAAACACACTTTACTGAAGCTAGCTGTAACCTTGAGCACCTTTCTGGAAAATTGAATAACATGAAGCCAGATGAGGAGGAGGAGAACTTAGTACTttacaagaagaagaaaactgcTGCTGATGGTAAACCAGGGAAGAAGTCTGAAAAACATGGTGATAACTTGTCTGTTGATAACTCAGATGTCAAGACAATGAAGGAAGATGACGGTGCAAATGTTGATAATAAGAAGTCCAATTTGAGTGACAGTACTTCTATGAATGAAAGGATTCAGAAGCTGGTACAACAGGATAAAGATGATTTATCTGATACAGGGAGCAATCTTGACATTGAATCACAGGATTTGGACACTAGTGAGGAAGATCAACCTAACTGGAGGCAGATGTTTATAAGTGGATTAGATGACAGAGAAAAGATTCTCTTGGAGGAGTACACATCAGTTTTAATGAACCATAAGGATCTCAGGGTGAAGCTCAATGATGTGGAAAAGAAAAATCGGGACACCATTTTTGAGTTGACACTTCAGCTAAGGGAAATGAAGAATGCTCTCGTCACGAAGGATAAAGAGATACAGTTTTTGCATCAGAAGCTGAACTCTCCTGATGCAAATCCTGATGAAAGTCCCTACACTATGACCACAGAATACAAATACACACCACATGAAGCGCTTCTTCAAAAAGCAGGTCAAGGAGCTAACGTGCCGGACTCAGAAATTTCACCTATAAATTTAGATGCAAATGCAGCCACAACCCCTTTCGCAGAACAAGTTGAAACTGAAAGCAGAGGAAATATTGCCTTATCATCTGTGAAAATGACACTAGAGAAGCTCATGGCACGTCAAGATAAGCGCCAAGACCTTTCAAACTTGGAACAGAAATTCCGTTCAAACATCGACAATATGCTAGAAGAGAACCTAGAGTTCTGGTTGAGGTTTAGCACTTCAGTTCATCAGATTCAAAAGTTCCAAAACTCTATTCAGGACTTAAAAGCTGAGCTGAAGCAAATAAGGGAGAAAAACACTAAGTCTGAAGGGTATTCACATTCTAAGCAACAGCCTATACAATCTCAACTCAGGCCAATATTCAGACACCTGAGAGAGATAAGAACTGAATTATCACTCTGGGTGGAACACAATGCAGTGTTGCAGGATGAGCTGCAAGGAAGGCACTCATCTTTGTGCAATATCCAAGATGAGATTGCAAGGGCAGGGAACGTGGCATACGGTGCTGACATGGCTGAGCTAATTAGTAAGTACCAAGCTGCAAAGTTTCAGGGTGAGATTCTCAACATGAAGCAAGAGAACAGCAAGGTTGCAAGTGAACTGCAAGCAGGTCTTAGCCTTGTGAAGGGAATGAAAGATGATGTTGAGAAGACACTAGATGAGCTAGATGAAGCTATTGGtattaatagtaatattaataagaaaaatggcCAGATGAAACACGCCAGTAGTCGTGCTCGAATACCCTTGAGGTCTTTCTTGTTTGGAGTCAAGTTAAAGAAGCAAAAGCATCATCCATCGCTATTTGCATGTgtcaatccaacatttcacaAACAATACAGTATCAATGATCAAGCACCCGCCCCAATATAA 2928 0.404 MLQRAASNAYSWWWASHIRTKQSKWLDQSLQDMEEKVAETLNILCDEGDSFAKRAEMYYKKRPELVNFVEEAFRAYRALAERYDHLSKELQSANRTIASVFPDQVPCQIDEDDEEESDTGTNSSSPDPTNQAHNKPTVPKVPKTPKKDFRSPSMLLSRKGPLKRTSSPANYAPTILSSGLSKVEALAEIDKLQKEILALQTEKEFVRSLYERAYEKYWEIEDQITAMQKRVCSLQDEFGVGTVIEDNDARSLMAATALKSCQETLNKLQEIQAQSSKEAKEEYERVKKAHEMFETLRDQFISKYVSQQDQDDGDKSESLGTDKKCMDEEMDHLEHDVGVLREKIKQKLEEDSSNSLTVTEMAECIDELVNKVVTLETAVSSQTGSVKRLRSETDDLQTNIRKLEEDKEMLIEGSEVTNQKLKKLEEELQRVKMLNRSVITQDNTLQTHFTEASCNLEHLSGKLNNMKPDEEEENLVLYKKKKTAADGKPGKKSEKHGDNLSVDNSDVKTMKEDDGANVDNKKSNLSDSTSMNERIQKLVQQDKDDLSDTGSNLDIESQDLDTSEEDQPNWRQMFISGLDDREKILLEEYTSVLMNHKDLRVKLNDVEKKNRDTIFELTLQLREMKNALVTKDKEIQFLHQKLNSPDANPDESPYTMTTEYKYTPHEALLQKAGQGANVPDSEISPINLDANAATTPFAEQVETESRGNIALSSVKMTLEKLMARQDKRQDLSNLEQKFRSNIDNMLEENLEFWLRFSTSVHQIQKFQNSIQDLKAELKQIREKNTKSEGYSHSKQQPIQSQLRPIFRHLREIRTELSLWVEHNAVLQDELQGRHSSLCNIQDEIARAGNVAYGADMAELISKYQAAKFQGEILNMKQENSKVASELQAGLSLVKGMKDDVEKTLDELDEAIGINSNINKKNGQMKHASSRARIPLRSFLFGVKLKKQKHHPSLFACVNPTFHKQYSINDQAPAPI 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2506 975 Pfam KIP1-like protein 11 84 IPR011684 GO:0003779
Ssu6g2506 975 Coils Coil 182 209 - -
Ssu6g2506 975 Coils Coil 330 350 - -
Ssu6g2506 975 MobiDBLite consensus disorder prediction 111 174 - -
Ssu6g2506 975 Coils Coil 763 790 - -
Ssu6g2506 975 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 10 90 IPR011684 GO:0003779
Ssu6g2506 975 MobiDBLite consensus disorder prediction 481 566 - -
Ssu6g2506 975 Coils Coil 386 441 - -
Ssu6g2506 975 MobiDBLite consensus disorder prediction 481 520 - -
Ssu6g2506 975 PANTHER PROTEIN NETWORKED 2D 1 966 - -
Ssu6g2506 975 Coils Coil 69 96 - -
Ssu6g2506 975 MobiDBLite consensus disorder prediction 521 536 - -
Ssu6g2506 975 MobiDBLite consensus disorder prediction 121 137 - -
Ssu6g2506 975 PANTHER PROTEIN NETWORKED 2A 1 966 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2506 Ssu-Chr6 59056731 59060723 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2506 - - gmx:100784970 1640.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2506 6 59056731 59060723 Ssu6g2506 6 59056731 59060723 ECH
Ssu6g2506 6 59056731 59060723 Ssu1g3163 1 82732801 82736893 PCT