Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2468 ATGCATGacttttgtaccaaaaaaattagaacacaGCATTTCAACTCTCCACCCTTCTTCCCCCTTCACGCTATGTCCCTGCGCAAGAGGCTGAGAAACCTCGTACACAGTTTCAAGGACAAAGCCTCGGTGATCGCAGCGTCTCTCTCGCTCAAGCGCCACGTGTCCTCCGTTCGCGTCCATGTCCTCCGCGCCACCACTCACACCCTCTCCGCTCCTCCGTCGGCGGCCCGAATCGCCGCCGTTTTCTCCGCCGGGCGGGGCTCTTATCTCCTGCCGCGCGCCTGCATAAACGCCTCATGGACCTGCCTGCACAGAACCCGAAGAGCCACGGTGGCGCTGAAATGCCTCTTCACTCTCCACAACATCGCGTCGGAGGGACCCTTAGCGCTGAAGGACAGCCTCGCCCAGTACCCTTCCCACGGAGGGCGCAACGCCCTTAACCTCGCCGCGTTCCGCGACGACACGGACCTCGAAACCTTGGAGCTCAGCTCGTGGGTTCGGTGGTACGCGAATGTTCTGGAACATGCCTTAACGGTTTCGCGCGTTTTGGGTTATTATGTAAGTGGCTCGAGTGACGGCACCGAAAGAGAGGTTCGGGGGGTGTCGAGTGGCGTGTTGTTGTGTGAAATACGAGGTCTTGTGGATTTCGTGGAGCAGGTGAGTCACGCGCCCGAGTCGTTGCACCTTCAGAGGATTGACTTGGTGTATAGTGTTGTGAGATTGGTGTGCGAGGATTATGGGCGCGTGCAGCGCGAGATTTTGCGGCGCGTGGAGGAGGGTGGGAAGAGGGTGGAGGATTTGGATGTGGCGGAGTTGAGGGAGTTGGTGGGGTGTTTGAGGAGATTGGAGGGGTGTAGGGAGAGCTTGGTGGTTTTGTTTGTGAATAGGAAGCGGAACGATGCGTTTTGGGATTTGATTGGTCGGGTTAGGAATAAGGGGGTGCTGGTGATGGAGGAGGTGGAGGGGAGGTGGATGACCGCGGTGAGGGGTAAGAACGAGTCTGCTGAGTCGACTCGGTTCACCAACCCGTTTCTTGAGCCGGGGGAAATGATTCCGGTCCCACTGGGTGGCGCGTGGACACGTGTCAACGGAAGCGGGTTTCGGATAACTGTTCCAACGGTGGGATGA 1131 0.5721 MHDFCTKKIRTQHFNSPPFFPLHAMSLRKRLRNLVHSFKDKASVIAASLSLKRHVSSVRVHVLRATTHTLSAPPSAARIAAVFSAGRGSYLLPRACINASWTCLHRTRRATVALKCLFTLHNIASEGPLALKDSLAQYPSHGGRNALNLAAFRDDTDLETLELSSWVRWYANVLEHALTVSRVLGYYVSGSSDGTEREVRGVSSGVLLCEIRGLVDFVEQVSHAPESLHLQRIDLVYSVVRLVCEDYGRVQREILRRVEEGGKRVEDLDVAELRELVGCLRRLEGCRESLVVLFVNRKRNDAFWDLIGRVRNKGVLVMEEVEGRWMTAVRGKNESAESTRFTNPFLEPGEMIPVPLGGAWTRVNGSGFRITVPTVG 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2468 376 Gene3D - 30 187 IPR008942 -
Ssu6g2468 376 PANTHER CLATHRIN ASSEMBLY PROTEIN 25 359 - -
Ssu6g2468 376 ProSiteProfiles ENTH domain profile. 50 188 IPR013809 -
Ssu6g2468 376 CDD ANTH_N_AP180_plant 59 181 - -
Ssu6g2468 376 PANTHER CLATHRIN ASSEMBLY PROTEIN 25 359 IPR045192 GO:0048268|GO:0072583
Ssu6g2468 376 Pfam ANTH domain 59 187 IPR011417 GO:0005543
Ssu6g2468 376 SUPERFAMILY ENTH/VHS domain 58 185 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2468 Ssu-Chr6 58140304 58141434 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2468 - - gmx:100817573 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2468 6 58140304 58141434 Ssu1g3136 1 82035969 82037590 PCT