Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3136 ATGGCAAAAGAGGCTAAGAAACCTCGCCCACAGCCTCAAAGACAAAGCCTCGGTGATCGCCGCAGCGCTATCCATGAAGAGCCACGTGTCCTCGGTCCGCGTCCACGTGCTCCGCGCCACCACGCACGCCCTCTCCGCCCCTCCCTCCGAGGAAACCCTGGCCGCCGTCCTCGCCGCCGGGCAGGGCTCCCACCGCCTCCCGCGCGCGTGCATCGACGCGCTCATGGACCGCCTCCACACCACGCGCAGCGCCACGGTGGCACTGAAGTGCCTCTACACGCTCCACAACGTCGTCGTGAGGGACCCTTCACTCTGAAAGACCAACTCTCCTGTTACCCTTCCTACGGTGGCCGCAATTTCCTCAACCTGTCGACGTTCCGCGACGACTCGGACGTGGAATCGGTGGAACTGAGTTCGTGGGTTCGGTGGTATGCGGGCGTTTTGGAGCAGAGCTTAACGGTGTCCAGAGTCTTGGGGTATTACTTGAACTCCTGCGAGTCCCAAGAAAGGAGGAAGTCTTTAGTTTCAGGCGCGTCGAACGCGGATTTGTTGTGCAAGTTGGAAACCCTCGTGGGTTTCGTCGAGGAAATAAGCCACGTGCCCGATTCGCTGCACCTTCAGAGGAGCGAGTTGGTGTACGAGGTGGTGAGGTTGGTGGGCGAGAGTTATAGGAGCGTGCAGGGCGAGATTGTGCTGCGGTTGGAGGAGCTTGGGGACAGAATGGAGGGTATCGATGTGGGGGAGTTGAACGAGTTGGTGGGGTGTTTGGGGAGGTTGGAGGGGAGTCACGAGAAGTTGGTGCTTTTGTTTGTGAATAGGAGAAAGAACAATGGGTTTTGGGATTTGGTTAAGTACGACGAGGGTGAAGGGCGTGGCGAAGAAGGGGGAGATTGA 894 0.5895 MAKEAKKPRPQPQRQSLGDRRSAIHEEPRVLGPRPRAPRHHARPLRPSLRGNPGRRPRRRAGLPPPPARVHRRAHGPPPHHAQRHGGTEVPLHAPQRRREGPFTLKDQLSCYPSYGGRNFLNLSTFRDDSDVESVELSSWVRWYAGVLEQSLTVSRVLGYYLNSCESQERRKSLVSGASNADLLCKLETLVGFVEEISHVPDSLHLQRSELVYEVVRLVGESYRSVQGEIVLRLEELGDRMEGIDVGELNELVGCLGRLEGSHEKLVLLFVNRRKNNGFWDLVKYDEGEGRGEEGGD 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3136 297 PANTHER CLATHRIN ASSEMBLY PROTEIN 100 284 IPR045192 GO:0048268|GO:0072583
Ssu1g3136 297 MobiDBLite consensus disorder prediction 1 97 - -
Ssu1g3136 297 PANTHER CLATHRIN ASSEMBLY PROTEIN 100 284 - -
Ssu1g3136 297 MobiDBLite consensus disorder prediction 35 57 - -
Ssu1g3136 297 Gene3D - 94 161 IPR008942 -
Ssu1g3136 297 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3136 Ssu-Chr1 82035969 82037590 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3136 - - gmx:100788852 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3136 1 82035969 82037590 Ssu1g3136 1 82035969 82037590 ECH
Ssu6g2468 6 58140304 58141434 Ssu1g3136 1 82035969 82037590 PCT