Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2458 ATGGCATCATCTATTGCATTAGTTTTGGGTCTCTGCCTAGCAATCAACATGGCCTTGCCGACGCTGGCAGCAATTCACACAGTCGGAGACACCTCAGGTTGGACAATCGGTGCTGATTACAGCACATGGGCTAGTAGCTTGAACTTTAAAGTCGGTGATGGTCTTGTTTTCAATTATGGGGCTGGTCACACTGTGGACGAAGTTAAAGAAAGCGATTACAAGAGCTGCACTACGGGCAATTCCCTGAGTACAGACAGTAGTGGCGCCACCACTATTGCCCTCAAGACTGCGGGCACTCATTACTTCATATGTGCTGTTCCTGGGCATTGCAAGGGTGGCATGAAGCTTGCTGTCACTGTTAAGGCTAAAAAAGCCTCTGCTCCTGCTATGGCACCTTCAACTGGAAAGGACTCACCTTCTGATGACACCAAAGACACACCCACTCCCACCACCACTCCTACAACTCCAACCTCCACCACTACCACATCTTCCCATACAACACATGCGTCATCAGCAACTGGTCGCTCACCAATTGTTGCTTTGTTTATTGTTTCTTGGATCTCCTACTTGGTGTTGCGTTTGGTATGA 588 0.4864 MASSIALVLGLCLAINMALPTLAAIHTVGDTSGWTIGADYSTWASSLNFKVGDGLVFNYGAGHTVDEVKESDYKSCTTGNSLSTDSSGATTIALKTAGTHYFICAVPGHCKGGMKLAVTVKAKKASAPAMAPSTGKDSPSDDTKDTPTPTTTPTTPTSTTTTSSHTTHASSATGRSPIVALFIVSWISYLVLRLV 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2458 195 PANTHER BLUE COPPER PROTEIN 8 192 IPR039391 GO:0009055
Ssu6g2458 195 MobiDBLite consensus disorder prediction 144 171 - -
Ssu6g2458 195 ProSiteProfiles Phytocyanin domain profile. 24 122 IPR003245 GO:0009055
Ssu6g2458 195 ProSitePatterns Type-1 copper (blue) proteins signature. 98 114 IPR028871 -
Ssu6g2458 195 CDD Phytocyanin 26 120 - -
Ssu6g2458 195 Gene3D - 22 127 IPR008972 -
Ssu6g2458 195 MobiDBLite consensus disorder prediction 127 171 - -
Ssu6g2458 195 PANTHER BLUE COPPER PROTEIN-LIKE 8 192 - -
Ssu6g2458 195 SUPERFAMILY Cupredoxins 23 120 IPR008972 -
Ssu6g2458 195 Pfam Plastocyanin-like domain 34 114 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2458 Ssu-Chr6 57856079 57858778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2458 31 129 Miscellaneous Gene Families AT1G22480 60.606 8.84e-35 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2458 - - gmx:100305666 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2458 6 57856079 57858778 Ssu6g2458 6 57856079 57858778 ECH
Ssu6g2458 6 57856079 57858778 Ssu1g3127 1 81825288 81826289 PCT