Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3127 ATGGCATTCTCTAGTGCTTTGGTTTGGGGCTTATTGCTAGCAATCAACATGGCCCTGCCAACCCTGGCAACCGTCTTCACCGTGGGAGATACTTCAGGTTGGGCAATTACCGGTGATTATAGCACATGGACTAGTGACAAGACCTTTGCAGTGGGTGATAGTCTCGTGTTCAACTATGGAGCGGGGCACACAGTGGATGAAGTTAAAGAGAGCGACTACAAATCGTGCACGGCAGGGAATTCAATTAGTACGGACAGTAGTGGCGCGACCACAATTGCCCTTAAGACTGCTGGCACTCATTACTTCATATGTTCTGCGCCTGGACATTGTTCTGGGGGCATGAAACTTGCCGTCACTGTCAAAGCAGGAAAAGCCGCTGCTCCTTCAACAACGCCAACTGGGAAGGCTTCACCTTCTGACAGCACAGGCACCACAGCCACACCCACCACCACTAAATCAAATTCGTCTTCAGCGAGTAGTGTCTCACCAATTGTTGCTGTGTTGATTGTTTCGTGCATCTCTTACTGTGTTTTGCGTCTGGTATGA 546 0.4963 MAFSSALVWGLLLAINMALPTLATVFTVGDTSGWAITGDYSTWTSDKTFAVGDSLVFNYGAGHTVDEVKESDYKSCTAGNSISTDSSGATTIALKTAGTHYFICSAPGHCSGGMKLAVTVKAGKAAAPSTTPTGKASPSDSTGTTATPTTTKSNSSSASSVSPIVAVLIVSCISYCVLRLV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3127 181 Pfam Plastocyanin-like domain 35 114 IPR003245 GO:0009055
Ssu1g3127 181 MobiDBLite consensus disorder prediction 130 158 - -
Ssu1g3127 181 PANTHER BLUE COPPER PROTEIN-LIKE 1 178 - -
Ssu1g3127 181 SUPERFAMILY Cupredoxins 23 120 IPR008972 -
Ssu1g3127 181 ProSiteProfiles Phytocyanin domain profile. 24 122 IPR003245 GO:0009055
Ssu1g3127 181 ProSitePatterns Type-1 copper (blue) proteins signature. 98 114 IPR028871 -
Ssu1g3127 181 MobiDBLite consensus disorder prediction 126 158 - -
Ssu1g3127 181 CDD Phytocyanin 24 120 - -
Ssu1g3127 181 PANTHER BLUE COPPER PROTEIN 1 178 IPR039391 GO:0009055
Ssu1g3127 181 Gene3D - 22 127 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3127 Ssu-Chr1 81825288 81826289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3127 31 120 Miscellaneous Gene Families AT1G22480 68.889 2.25e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3127 - - gmx:100306522 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3127 1 81825288 81826289 Ssu1g3127 1 81825288 81826289 ECH
Ssu6g2458 6 57856079 57858778 Ssu1g3127 1 81825288 81826289 PCT