Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2453 ATGCAGAGGCGCAAGCGTATTCCGTTGGCGCTGCTGAGAAAGTTGCTCATTGCAGCCATATGCTCGATAGCGTTTGTGGCTCTCTTCTCTGTGCGCGTACACATTGTTCCTTCCTCTAAGGATCACAGGTTCAACGACAAGATCTCCACGCCTCAGGATCTGCAAAGCTGGACTCGAGAGCTCGCTCCACCTCATTTATCCAAAGCTCCACTTCCTACTCCCAAGTTGAGTGGTTCGAGAGGGTATTTAGATTACCAGAAGCTGTGGAAGCCTCCATCAAATCGTGGGTTTCTGCCCTGTACAAATCCCACACCAAATTACACCACTTCGGCCGAGTCGCGAGGATATCTTTTAGTTCATACAAATGGTGGACTCAACCAAATGCGTTCTGGGATATGTGATATGGTAGCTGTAGCTCGTATCATAAATGCCACTCTTGTAATTCCGGAACTTGATAAAAGATCATTTTGGCAAGATACTAgcAATTTCTCTGATATTTTTGATGAAGAGCATTTTATGACTTCTCTAGCTAATGATGTAAAAATCATTAAGAAGCTTCCCAAAGAACTAGTCAATGCAAACAGAGTGGTCAAGCAATTCATAAGCTGGTCTGGCATGGATTACTATGAGAATGAGATTGCTAGCTTGTGGGAAGATTACCAAGTCATTCGAGCTTCCAAATCTGATTCACGATTAGCAAACAACAATCTACCTCCAGACATTCAGAAGCTTCGCTGCCGAGCTTGTTATGAAGCTCTTCGCTTCTCTCCTCACATTGAACAAATGGGAAAATTGTTGGTGGAGAGGATGAGGtcatttggtccttatattGCATTGCATTTGCGTTACGAGAAGGATATGCTTGCATTTAGTGGGTGCTCCCATGATTTATCTCCTGATGAAGCTGAAGAGCTACGGATGATCAGAGAGAACATTTCTTATTGGAAAATAAAGGACATTAATCCAATAGAACAGAGGTCCAAAGGGCTTTGCCCCTTAACTCCAAAGGAAGTTGGGATTTTTCTTACTGCTCTTGGATACCCATCAACAATTCCAATATATATTGCTGCTGGAGAGATATATGGGGGCGAGTCCCATATGGCTGAACTGCGTTCCCGTTATCCGTTGTTGATGAGCAAGGAAAAGTTGGCATCCATAGAAGAGCTTGAACCGTTTTCTAATCATGCATCCCAAATGGCTGCTCTTGACTATATCGTATCTGTTGAAAGTGATGTATTTATACCTTCTTATTCCGGAAACATGGCAAAGGCTGTTGAGGGTCATCGCCGTTTTCTTGGACGTGGAAGAACAATATCTCCAGACAAGTAA 1329 0.4281 MQRRKRIPLALLRKLLIAAICSIAFVALFSVRVHIVPSSKDHRFNDKISTPQDLQSWTRELAPPHLSKAPLPTPKLSGSRGYLDYQKLWKPPSNRGFLPCTNPTPNYTTSAESRGYLLVHTNGGLNQMRSGICDMVAVARIINATLVIPELDKRSFWQDTSNFSDIFDEEHFMTSLANDVKIIKKLPKELVNANRVVKQFISWSGMDYYENEIASLWEDYQVIRASKSDSRLANNNLPPDIQKLRCRACYEALRFSPHIEQMGKLLVERMRSFGPYIALHLRYEKDMLAFSGCSHDLSPDEAEELRMIRENISYWKIKDINPIEQRSKGLCPLTPKEVGIFLTALGYPSTIPIYIAAGEIYGGESHMAELRSRYPLLMSKEKLASIEELEPFSNHASQMAALDYIVSVESDVFIPSYSGNMAKAVEGHRRFLGRGRTISPDK 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2453 442 CDD O-FucT_plant 116 437 IPR024709 -
Ssu6g2453 442 PIRSF UCP009360 1 442 IPR024709 -
Ssu6g2453 442 PANTHER OS02G0726500 PROTEIN-RELATED 3 442 - -
Ssu6g2453 442 PANTHER AUXIN-INDEPENDENT GROWTH PROMOTER-LIKE PROTEIN 3 442 - -
Ssu6g2453 442 Pfam GDP-fucose protein O-fucosyltransferase 116 431 IPR019378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2453 Ssu-Chr6 57769235 57772918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2453 60 442 Miscellaneous Gene Families AT1G22460 71.540 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2453 - - gmx:100795727 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2453 6 57769235 57772918 Ssu6g2453 6 57769235 57772918 ECH
Ssu6g2453 6 57769235 57772918 Ssu1g3119 1 81697765 81701612 PCT