Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3119 ATGAAGACCGCCACAGTCCGAGAGAGAAAAGGATCAATGCAGAGGCGCAGGACGGTTCATTTGGGCATGCTGAGGAGGTTCCTCGCCGCAACGATATTCTCATTAGTTgtcacttctttcttctttgttcaTGTTCACGTCTCTCCTTCCCCCACTGATCACAAGTTCAATGACAAGATCCCCTCgTTTCATGACCTGCAAAGCTGGACTCGAGAACTCGCTCCGCCTCTTCTATCCATGGTTCCACTCTCTGTTTCCAAGTTGAAGGATTCAAGGAAGGATTCAGACTACGAGAAACTTTGGAAGCCTCCACCAAATCATGGGTTTATACCCTGTACAAAGCCTACTCCTAATTACACAACTCCTGCAAGGTCACGTGGTTACCTTTCAGTTCATACAAATGGCGGGCTAAACCAAATGCGTACTGGGATATGTGATATGGTAGCTATAGCTCGTATCATAAATGCTACTCTTGTAATTCCAGAACTTGATAAAAAGTCATTTTGGCATGATACTAGCATTTTCTCTGATATCTTTGATGAAGAGTGGTTTATTAGTTCTCTAGctaatgatataaaaatcattaagaaGCTTCCCAAAAAACTGGTTAATGCAACCAAAATTGTCATGCAATTCAAAAGCTGGTCGGGTATGGATTACTATGAGAATGAGATTGCTGCCTTGTGGGATAATTTCAAAGTAATTCGAGCTTCCAAATCTGATTCTCGATTAGCAAATAACAATCTACCTCCAGATATTCAGAAGCTTCGCTGCCGTGCTTGTTATGAAGCTCTTCGTTTCTCTCCTCAGATCGAAAAAATGGGAAAAAAATTGGTGGAGAGGATGAGATCATTCGGCCCTTACATTGCATTACATTTACGTTATGAGAAGGATATGCTTGCATTTAGTGGGTGCACACATGAATTATCTACAGCTGAGGCTGAACAGCTACGGATTATCAGAGAGAGTACTACTTATTGGAAAAGAAAGTACATTAATCCCATAGAAGAGAGGTCCAAAGGGTTTTGCCCCTTAACTCCAAAGGAAGTTGGAATTTTTCTTACTGCTCTTGGATACCCATCAAAGGCTCCAATATATATTGCTGCTGGGGAGATATATGGGGGTGAGTCCCATATGACTGACCTGCGATCCCGTTATCCTTTGTTAATGAGCAAGGAAAAGTTGGCATCCATTGAGGAGCTTGAACCCTTTTCTAGTCATGCGTCTCAAATGGCTGCTCTTGACTATATTGTATCAGTTGAAAGTGATGTATTTGTACATTCTTACCCTGGAAACATGGCAAAGGCTGTTGAAGGCCATCGTCGTTTTCTTGGGAGTGGAAGAACAATATCTCCTGATAGGTGA 1365 0.4103 MKTATVRERKGSMQRRRTVHLGMLRRFLAATIFSLVVTSFFFVHVHVSPSPTDHKFNDKIPSFHDLQSWTRELAPPLLSMVPLSVSKLKDSRKDSDYEKLWKPPPNHGFIPCTKPTPNYTTPARSRGYLSVHTNGGLNQMRTGICDMVAIARIINATLVIPELDKKSFWHDTSIFSDIFDEEWFISSLANDIKIIKKLPKKLVNATKIVMQFKSWSGMDYYENEIAALWDNFKVIRASKSDSRLANNNLPPDIQKLRCRACYEALRFSPQIEKMGKKLVERMRSFGPYIALHLRYEKDMLAFSGCTHELSTAEAEQLRIIRESTTYWKRKYINPIEERSKGFCPLTPKEVGIFLTALGYPSKAPIYIAAGEIYGGESHMTDLRSRYPLLMSKEKLASIEELEPFSSHASQMAALDYIVSVESDVFVHSYPGNMAKAVEGHRRFLGSGRTISPDR 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3119 454 PANTHER AUXIN-INDEPENDENT GROWTH PROMOTER-LIKE PROTEIN 11 454 - -
Ssu1g3119 454 Pfam GDP-fucose protein O-fucosyltransferase 128 443 IPR019378 -
Ssu1g3119 454 PIRSF UCP009360 1 454 IPR024709 -
Ssu1g3119 454 PANTHER OS02G0726500 PROTEIN-RELATED 11 454 - -
Ssu1g3119 454 CDD O-FucT_plant 128 449 IPR024709 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3119 Ssu-Chr1 81697765 81701612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3119 72 454 Miscellaneous Gene Families AT1G22460 69.713 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3119 - - gmx:100807411 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3119 1 81697765 81701612 Ssu1g3119 1 81697765 81701612 ECH
Ssu6g2453 6 57769235 57772918 Ssu1g3119 1 81697765 81701612 PCT