Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2445 ATGGCCATCTCCACTTCCAACTCCCTCATTCCCACCAAATCACTCGTCCCTCAGTCCCACCCCCTCATTCCCTCCACCAACCTCAGGCCCACCCTCCGGCCCAAGCCCGGGCCTACCCCTTCCATCCTCGCCGTCCACGCCGCCGAGCCCGCCAAAAACCCCGTCGTCACCGACAAGCCCAAGCCCCAGCCTCAagctccacctccacctccccaGACCGCGGCCCGCGCGGGCAAATGGGCCGTGGACAGCTGGAAGTCCAAGAAGGCCCTGCAGCTGCCCGAATACCCGAGCCAGGAGGAGCTGGATTCGGTCCTCCAGACCATCGAGGCGTTCCCTCCCATCGTCTTCGCCGGCGAGGCCAGGACGCTCGAGGAGCGTCTCGGCGAAGCCGCGTTGGGGAATGCCTTCCTTCTTCAAGGCGGAGACTGTGCCGAAAGCTTCAAGGAGTTCAATGCCAACAACATCCGTGACACCTTCCGAATCCTCCTTCAAATGGGTGTCGTCATGATGTTTGGAGGCCAAATGCCTGTCATCAAGGTGGGAAGAATGGCGGGGCAATTTGCGAAGCCGAGGTCGGATCCGTTTGAGGAGAAGAACGGCCTGAAGCTTCCAAGTTACAGAGGGGATAACGTTAACGGAGACGCGTTTGATGAGAAATCAAGGATTCCGGATCCGCAGAGGATGATTAGGGCTTATTGTCAAGCCGCGGCTACGCTTAATCTTCTTAGAGCTTTCGCCACGGGAGGTTATGCTGCTATGCAGAGGGTTACTCAATGGAATTTGGACTTCACCGAGCACAGCGAACAGGGAGatagGTACCGAGAGCTTGCTCACAGAGTTGATGAGGCCCTTGGATTCATGGCTGCTGCTGGGCTCACAGTGGACCATCCCATAATGAAAACAACTGAATTCTGGACATCTCATGAATGCTTACTGTTGCCTTATGAACAATCACTCACCAGGTTGGACTCAACTTCTGGTCTCTACTATGACTGTTCAGCCCACATGCTTTGGGTTGGGGAACGAACCAGGCAGTTGGATGGTGCCCATGTTGAGTTTCTAAGAGGAGTTGCTAATCCCTTGGGAATTAAGGTAAGCGATAAGATGGATCCAAATGAGCTTGTTAAACTCATCGAGATCTTGAATCCCCAAAACAAACCAGGGAGAATAACTGTGATCACGAGGATGGGAGCTGAAAATATGAGGGTGAAGCTTCCACATCTCATCAGGGCAGTGCGCAGGGCAGGGCAAATTGTCACCTGGGTCAGCGATCCTATGCATGGAAACACCATAAAGGCTCCATGTGGTCTCAAAACTCGCCCCTTCGATTCCATCAGGGCTGAAGTGAGAGCATTCTTCGATGTGCACGATCAAGAAGGAAGCCACCCAGGAGGGGTTCACCTAGAGATGACGGGTCAAAATGTGACCGAGTGCATTGGTGGGTCAAGGACGGTCACATTTGATGACTTGAGCTCACGCTACCACACACACTGTGACCCAAGGCTCAATGCTTCACAATCCCTTGAGCTTGCTTTCATCATCGCTGAACGTTTGAGAAAGAGCAGGATCAGATCGCAGCAACCTCTTGCCTCTGTAGGACTGTAA 1608 0.5305 MAISTSNSLIPTKSLVPQSHPLIPSTNLRPTLRPKPGPTPSILAVHAAEPAKNPVVTDKPKPQPQAPPPPPQTAARAGKWAVDSWKSKKALQLPEYPSQEELDSVLQTIEAFPPIVFAGEARTLEERLGEAALGNAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVMMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGLKLPSYRGDNVNGDAFDEKSRIPDPQRMIRAYCQAAATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMAAAGLTVDHPIMKTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITVITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKSRIRSQQPLASVGL 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2445 535 Gene3D Aldolase class I 279 521 IPR013785 -
Ssu6g2445 535 Gene3D Aldolase class I 113 278 IPR013785 -
Ssu6g2445 535 Pfam Class-II DAHP synthetase family 80 516 IPR002480 GO:0003849|GO:0009073
Ssu6g2445 535 TIGRFAM DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase 80 522 IPR002480 GO:0003849|GO:0009073
Ssu6g2445 535 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1, 2 3 531 IPR002480 GO:0003849|GO:0009073
Ssu6g2445 535 MobiDBLite consensus disorder prediction 1 26 - -
Ssu6g2445 535 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 3 531 - -
Ssu6g2445 535 SUPERFAMILY Aldolase 74 520 - -
Ssu6g2445 535 MobiDBLite consensus disorder prediction 60 74 - -
Ssu6g2445 535 MobiDBLite consensus disorder prediction 1 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2445 Ssu-Chr6 57551974 57556401 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2445 K01626 - gmx:100797019 981.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2445 6 57551974 57556401 Ssu6g2445 6 57551974 57556401 ECH
Ssu6g2445 6 57551974 57556401 Ssu1g3113 1 81534178 81543692 PCT