Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3113 ATGGCCGCGACCGCTTCCAACTCTCTCCTTCGCACCAAATCCCTAGTCCCAACGCACTCCCTCCTCCCTTCGTCCAACCTCAACAACCAATGCTACTCGTTTCCCAGGCCCAAGCCCAGGCCCATCCAAGCCGTTCAGGCCGCCGACAACCCCGTAAATGTAAAGCAGCAGCAGCCCAGGCGCGAGGCAAGGTGGGCCGTTGACAGCTGGAAGTCGAAAAAGGCCCTTCAACTCCCGGAATACCCGAGCGGAGAGAAGCTGGAGGCGGTGCTGAAGAGCCTGGAATCGTTCCCTCCGATCGTGTTCGCGGGAGAGGCCCGGAACCTGGAGGAGCGCCTGGGCGAGGCCGCCATGGGGAAAGCGTTCCTCCTCCAGGGCGGAGACTGCGCCGAGAGCTTCAAGGAGTTTCACGCCAACAACATTCGCGACACCTTCAGAATCCTCCTCCAGATGAGCGTCGTCATGATGTTCGGAGGCCAGATGCCCGTCATTAAGGTGGGGCGAATGGCGGGTCAATTTGCGAAACCGAGATCGGAAGGGTTCGAGGAGCAAAACGGGGTGAAGCTGCCGAGTTACAGGGGAGATAATGTGAATGGAGATGCGTTTGAGGAGAAGGCGAGGATTCCTGATCCCGAAAGGATGATTAGAGCGTACAGTCAATCCGCTGCGACTCTGAATCTTCTCAGGGCATTTGCGACGGGAGGCTATGCTGCTATGCAAAGGGTTAGCCAGTGGAATTTGGACTTCACGCAGCACAGCGAACAAGGAGACAGGTACCTTGAGCTTGCTCACCGAGTTGATGAGGCCCTTGGATTCATGGCTGCTGCAGGCCTCACGGTGGACCATCCTATAATGAAAACAACTGAGTTCTGGACTTCACATGAATGTTTGCTATTGCCATATGAACAATCACTCACTAGGTTGGACTCAACTTCTGGTCTCTACTATGACTGCTCCGCCCATATGCTTTGGGTTGGGGAACGGACCAGGCAGCTGGATGGTGCCCATGTTGAGTTTCTAAGAGGAGTTGCTAATCCCCTTGGAATTAAGGTAAGTGATAAGATGGATCCAAATGAGCTTGTTAAATTGATCGAGATCTTGAATCCCCAAAACAAACCAGGGAGAATAACTGTGATCACGAGGATGGGAGCTGAAAATACGAGGGTAAAGCTTCCACATCTGATCAGGGCAGTGCGCAGAGCGGGACAAATTGTAACTTGGGTCAGTGATCCTATGCATGGAAACACCATAAAGGCTCCGTGTGGACTCAAAACTCGCCCCTTCGATGCCATCAGGGCAGAGGTGAAAGCATTTTTTGACATGCATGAACAAGAAGGTAGTCACCCAGGTGGGGTTCATCTAGAGATGACGGGTCAAAATGTGACTGAGTGCATTGGTGGGTCAAGGACGGTCACGTTTGATGATCTTAGCTCACGTTACCACACACACTGTGACCCTAGGCTTAATGCCTCTCAATCTCTTGAGCTTGCTTTCATCATTTCTGAACGGCTCAGAAAGAGTAGGATCGGATCGGAGCAGTCTCTTGCCTCTATGGGattgtaa 1563 0.5272 MAATASNSLLRTKSLVPTHSLLPSSNLNNQCYSFPRPKPRPIQAVQAADNPVNVKQQQPRREARWAVDSWKSKKALQLPEYPSGEKLEAVLKSLESFPPIVFAGEARNLEERLGEAAMGKAFLLQGGDCAESFKEFHANNIRDTFRILLQMSVVMMFGGQMPVIKVGRMAGQFAKPRSEGFEEQNGVKLPSYRGDNVNGDAFEEKARIPDPERMIRAYSQSAATLNLLRAFATGGYAAMQRVSQWNLDFTQHSEQGDRYLELAHRVDEALGFMAAAGLTVDHPIMKTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITVITRMGAENTRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDAIRAEVKAFFDMHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIISERLRKSRIGSEQSLASMGL 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3113 520 Gene3D Aldolase class I 265 506 IPR013785 -
Ssu1g3113 520 Gene3D Aldolase class I 98 264 IPR013785 -
Ssu1g3113 520 TIGRFAM DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase 65 507 IPR002480 GO:0003849|GO:0009073
Ssu1g3113 520 Pfam Class-II DAHP synthetase family 65 501 IPR002480 GO:0003849|GO:0009073
Ssu1g3113 520 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 2, CHLOROPLASTIC 28 519 - -
Ssu1g3113 520 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1, 2 28 519 IPR002480 GO:0003849|GO:0009073
Ssu1g3113 520 SUPERFAMILY Aldolase 54 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3113 Ssu-Chr1 81534178 81543692 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3113 K01626 - gmx:100809016 884.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3113 1 81534178 81543692 Ssu1g3113 1 81534178 81543692 ECH
Ssu6g2445 6 57551974 57556401 Ssu1g3113 1 81534178 81543692 PCT