Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2435 ATGTCTAGGCCTCTGCAAAGAGGTGTGTCTGGTGGGGTTAGGGTCCCTGACAGTGGCCATGACTTGTGGGACTCCCAATCTAAAGATAAAGCAGAAAAGGAAGATTTTGATACGAGGGGTTCTTCAGATCATAGCCCTTTTGCTTTGAGGTTCCCTTTGAGGTTGCTTTTGGGAAATAATTCTGACTCCAAATATGGCAATGGCATGACTGAGAATGGTTTTGCTTCCAATCCCTTCATTGTGGGCACCCCGCGAAGCCGGCTTAAGTTGATGTTGCTTTCTTTGAAGTTTAGTTTAGTGTTTATAGTTGTTCTGGCGCTTACTGGATCTTTTTGGTGGACTTTATCGATTTCATCCTCATCAAGAGGTCACATTTACCATGGTTATAGAAGGCTTCAAGAGAAGCTTGTGTCGGACCTTTTGGATATCGGTGAGTTTTCTCGTGGTCCGTTGAGGTTGAAGGAAACGGAATTCTGTTCTCAGGAGTTGGAAAACTTTGTTCCTTGCTACAATGTTTCTGAGAATGTGGAATTGGGAGTTTCTGATGGCAATGAATTTGACCGGCAATGTATTGATGTGGAATCTCCATATTATCGAGAACTGCAAAACTGCATAGGAGGAATACAGAGCAGCCGTTGGGTTACAATTGAAAAATGGGAAAGATGGCCTTCCCGGGCTAACTTGAACAAGAACAAGTTGGCAATCTATGGGTTGCAGCCTGATGAACTTACCGAGGACTCTGACAGCTGGAGAACAGCAGTCCAGAATTATTGGTCACTCCTGTCACCTTTAATATTTTCTGATCATCCGAAAAGGCCTGGTGATGAGGACCCTTCACCACCTTACAACATGTTCCGAAATGTGCTAGACATGAATGCTCATCTTGGTGGCTTTAATTCTGCCTTGTTGCAAGCTAGAAAGTCTGTGTGGGTGATGAATGTGGTCCCAATAAGTGGACCCAATTATCTTCCCTTGATCCAGGACAGAGGATTTGTTGGCGTTTTGCATGATTGGTGCGAGGCATTTCCAACGTACCCCAGAACCTATGACTTGGTGCATGCAGCAGGACTTCTATCCCTTGAAACTGAGCAGCACAGATGCTCCATGCTTGACCTGTTCATTGAAATTGACAGGTTACTTCGTCCAGAGGGTTGGGTTATAATTCGCGACACAGTTCCCTTAATAGAATCAGCTAGAGCACTAACAGCACAGCTGAAGTGGGATGCAAGAGTGATAGAAATTGAAAGTGACAGTGATCAGAGACTCCTGATCTGCCAGAAACCTTTCTATAAGAGACAGGCAGGCTAA 1308 0.4472 MSRPLQRGVSGGVRVPDSGHDLWDSQSKDKAEKEDFDTRGSSDHSPFALRFPLRLLLGNNSDSKYGNGMTENGFASNPFIVGTPRSRLKLMLLSLKFSLVFIVVLALTGSFWWTLSISSSSRGHIYHGYRRLQEKLVSDLLDIGEFSRGPLRLKETEFCSQELENFVPCYNVSENVELGVSDGNEFDRQCIDVESPYYRELQNCIGGIQSSRWVTIEKWERWPSRANLNKNKLAIYGLQPDELTEDSDSWRTAVQNYWSLLSPLIFSDHPKRPGDEDPSPPYNMFRNVLDMNAHLGGFNSALLQARKSVWVMNVVPISGPNYLPLIQDRGFVGVLHDWCEAFPTYPRTYDLVHAAGLLSLETEQHRCSMLDLFIEIDRLLRPEGWVIIRDTVPLIESARALTAQLKWDARVIEIESDSDQRLLICQKPFYKRQAG 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2435 435 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 191 432 - -
Ssu6g2435 435 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 14 190 - -
Ssu6g2435 435 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 191 432 IPR004159 GO:0008168
Ssu6g2435 435 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 14 190 IPR004159 GO:0008168
Ssu6g2435 435 MobiDBLite consensus disorder prediction 1 44 - -
Ssu6g2435 435 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 192 427 IPR004159 GO:0008168
Ssu6g2435 435 MobiDBLite consensus disorder prediction 21 41 - -
Ssu6g2435 435 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 240 394 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2435 Ssu-Chr6 57152720 57157521 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2435 K23870 - cpap:110816762 540.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2435 6 57152720 57157521 Ssu6g2435 6 57152720 57157521 ECH
Ssu6g2435 6 57152720 57157521 Ssu1g3107 1 81374933 81381528 PCT