Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3107 ATGTCCAGGCCTCTGCACAGAGGGGTATCTGTTCGGATCCCTGATAGCAACAATGACTTGTGGGACTCACAATCCAAAGATAAAACAGAAAAGGAAGGTTTGGATAGAAGAGGTTCTTCTGGCCTCAGCCCCTCACCCTTGAGGTCTCCCTATAGGTTGCTTTTTGCAGATAATTCTCATTCCAAATATGGTATCACTGAGAATGGTTTCTCATCTGATCCCTTCATTATTGGCACTCCAAGAAGTAGGCATAAGTTGGTTCTTCTTTTCTTGAAGTTTAGTTTAGTGTTTATAGTTATTCTTGCCCTTGCTGGATCTTTTTGGTGGACAATCTCAATTTCAACTGCATCAAGAGGTCACATTTACCATGGTTATAGAAGACTCCAAGAGAAACTTGTATCGGACCTGTTGGATATCGGGGAGATTTCGTATGCTCCCTCTAGGCTGAAAGAATTGGAATTCTGTTATCAGGAGTTTGAAAATTATGTTCCTTGCTTTAATGTTTCTGACAATCTAGCTCTTGGTTTTTCTAATCAAGATGAAACTGTCTTATGGAAGAAAACTAGTAAAAGGAATTGCTATAGTAAAAGAAAGAATAGTTCTCCCCCTCCTTTATGTGGCAGAAGCTATGATGTGGAGTCTCCATATTATCGAGAATTGCAAAACTGCATAGGAGGAACACATAGCAGCCGTTGGATTTCTGTTGAAGAGAGGGAAACTTGGCCTTCTAGAGATCACTTGAACAAGAAGGAGCTCACAATCTATGGGCTGCAATCTGATGAATTTTCTGAGGACTCTGAAAGCTGGAGAGCAGCAGTCCATAATTATTGGTCTCTTCTGTCACCTTTAATATTTTCTGATCATCCAAAGAGACCTGGGGATGAGGACCCTCCACCACCTTATAACATGCTAAGAAATGTGCTAGACATGAATGCTCATTTTGGTGGTTTTAATTCTGCACTGTTGCGAGCTGGAAAATCCGTATGGGTAATGAATGTGGTCCCTGTGAGTGGATCCAACTATCTTCCCTTGATCCAGGACCGAGGTTATGTTGGCGTTTTGCACGATTGGTGTGAGGCCTTTCCAACGTACCCTAGAACCTATGACTTGGTGCATGCGGCAGGACTTTTATCCCTTGAATCTTCTCAGCAGCGCAGATGTACCATGCTTGACATGTTCATTGAAATTGACAGGTTACTTCGCCCAGAGGGTTGGATTATAATTCGTGACGCAGTTCCTTTGATAGAGTCAGCTAGAGCTCTAACAACAAGGCTAAAGTGGGATGCGCGAGTTGTAGAAATTGAAAGTGACAGCGATCAGAGACTCCTGATCTGTCAGAAACCTTTCTTTAAGAGACAGGCAAATTAA 1368 0.4232 MSRPLHRGVSVRIPDSNNDLWDSQSKDKTEKEGLDRRGSSGLSPSPLRSPYRLLFADNSHSKYGITENGFSSDPFIIGTPRSRHKLVLLFLKFSLVFIVILALAGSFWWTISISTASRGHIYHGYRRLQEKLVSDLLDIGEISYAPSRLKELEFCYQEFENYVPCFNVSDNLALGFSNQDETVLWKKTSKRNCYSKRKNSSPPPLCGRSYDVESPYYRELQNCIGGTHSSRWISVEERETWPSRDHLNKKELTIYGLQSDEFSEDSESWRAAVHNYWSLLSPLIFSDHPKRPGDEDPPPPYNMLRNVLDMNAHFGGFNSALLRAGKSVWVMNVVPVSGSNYLPLIQDRGYVGVLHDWCEAFPTYPRTYDLVHAAGLLSLESSQQRRCTMLDMFIEIDRLLRPEGWIIIRDAVPLIESARALTTRLKWDARVVEIESDSDQRLLICQKPFFKRQAN 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3107 455 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 177 447 IPR004159 GO:0008168
Ssu1g3107 455 MobiDBLite consensus disorder prediction 21 37 - -
Ssu1g3107 455 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 177 453 - -
Ssu1g3107 455 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 14 177 - -
Ssu1g3107 455 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 305 425 IPR029063 -
Ssu1g3107 455 MobiDBLite consensus disorder prediction 1 45 - -
Ssu1g3107 455 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 177 453 IPR004159 GO:0008168
Ssu1g3107 455 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 14 177 IPR004159 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3107 Ssu-Chr1 81374933 81381528 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3107 K23870 - gmx:100812530 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3107 1 81374933 81381528 Ssu1g3107 1 81374933 81381528 ECH
Ssu6g2435 6 57152720 57157521 Ssu1g3107 1 81374933 81381528 PCT