Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2434 ATGGAATCCTTTAACAAAAGCAGCATTGGTAAAAATGTTGGTTATCAAAGGGGGAGCCGGTTTCAAAGTGAAAAGTCTGGTCTCTTGCCCCAAAACCAATGGAATGCTTTCTCAACAGAATCATCCTCCTTTGCCAGAGTGGATGCATGGGTGAAAGGTCTTGAAATTCAACAACCACTTCCTGAGGAtgattttgatgatgacaatgcCAGAAGTATTGTCTTCCCACCTTCTCCTGATGCTGGTGGATCAATGATAGGAACCACATCTCAGTTGACTTATCCAGATGCCAATCTTTCAAAAGAGACTTTAAATGCCATTAGTGTAGTCCAATCTCTAAACCCAGCTTCAACTATTGCTCACATATCTGGTATTGGTATAAAAGCCATCCCTGCTATTTGTCACTTATCCAATCTCCGCTCTATCAACTTGTCAAACAATTTCATAGTTCACATCTCGCCAGGATTTCTACCAAAGGGTATTCAAACACTAAACTTGTCCAGAAACAAGATCAGCACCCTTGAGGGCTTTAGGGAATTGACGAAGTTGCGGGTACTTGACCTAAGTTACAATCGCATCTCAAGAATTGGACAAGGGTTGTCAAGTTGTACACTTATCAAAGAGCTATATCTTGTGGGAAACAAGATAAGTGATGTTGAGGGGCTACACAGGCTATTGAAGCTAACAGTTCTAGACTTGAGCTTCAACAAGATCACAACAACAAAAGCATTAGGCCAGCTAGTGGCTAACTACAACTCTCTTCAGGCCCTTAATCTGCTTGGAAATCCGATTCAAAGCAACATCAGTGATGACCAGTTAAGCAAAGCAGTCTGTGGTCTTCTTCCAAAGCTGGTGTACCTGAACAAGCAACCCCTCAAGGCTTATAGGACACGCGAAATATTCAGTGATAGTGTTGCCAGAGCTGCCCTAGGGAATTGCACGCGGAGCTGTGACAGAAAATCATCACTGAGAAGAGTTGGCCATGGAGGATCAAGTCTTTCCAGAGGGTATAGAAGAAGTGCCAGTGTTTCCCAGAAAAGCATGAACCGGGCAAGGAGGTGA 1062 0.4266 MESFNKSSIGKNVGYQRGSRFQSEKSGLLPQNQWNAFSTESSSFARVDAWVKGLEIQQPLPEDDFDDDNARSIVFPPSPDAGGSMIGTTSQLTYPDANLSKETLNAISVVQSLNPASTIAHISGIGIKAIPAICHLSNLRSINLSNNFIVHISPGFLPKGIQTLNLSRNKISTLEGFRELTKLRVLDLSYNRISRIGQGLSSCTLIKELYLVGNKISDVEGLHRLLKLTVLDLSFNKITTTKALGQLVANYNSLQALNLLGNPIQSNISDDQLSKAVCGLLPKLVYLNKQPLKAYRTREIFSDSVARAALGNCTRSCDRKSSLRRVGHGGSSLSRGYRRSASVSQKSMNRARR 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2434 353 Gene3D Ribonuclease Inhibitor 80 202 IPR032675 -
Ssu6g2434 353 ProSiteProfiles Leucine-rich repeat profile. 138 158 IPR001611 GO:0005515
Ssu6g2434 353 ProSiteProfiles Leucine-rich repeat profile. 160 181 IPR001611 GO:0005515
Ssu6g2434 353 ProSiteProfiles Leucine-rich repeat profile. 182 204 IPR001611 GO:0005515
Ssu6g2434 353 SUPERFAMILY Outer arm dynein light chain 1 125 292 - -
Ssu6g2434 353 Pfam Leucine Rich Repeat 138 158 IPR001611 GO:0005515
Ssu6g2434 353 SMART LRR_typ_2 180 203 IPR003591 -
Ssu6g2434 353 SMART LRR_typ_2 225 247 IPR003591 -
Ssu6g2434 353 SMART LRR_typ_2 136 158 IPR003591 -
Ssu6g2434 353 ProSiteProfiles Leucine-rich repeat profile. 227 248 IPR001611 GO:0005515
Ssu6g2434 353 PRINTS Leucine-rich repeat signature 180 193 - -
Ssu6g2434 353 PRINTS Leucine-rich repeat signature 161 174 - -
Ssu6g2434 353 MobiDBLite consensus disorder prediction 321 353 - -
Ssu6g2434 353 MobiDBLite consensus disorder prediction 1 26 - -
Ssu6g2434 353 PANTHER NISCHARIN RELATED 27 352 - -
Ssu6g2434 353 ProSiteProfiles Leucine-rich repeat profile. 205 226 IPR001611 GO:0005515
Ssu6g2434 353 SMART LRR_sd22_2 203 224 - -
Ssu6g2434 353 SMART LRR_sd22_2 225 246 - -
Ssu6g2434 353 SMART LRR_sd22_2 158 179 - -
Ssu6g2434 353 SMART LRR_sd22_2 180 202 - -
Ssu6g2434 353 Gene3D Ribonuclease Inhibitor 203 296 IPR032675 -
Ssu6g2434 353 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 27 352 - -
Ssu6g2434 353 Pfam Leucine-rich repeat 162 250 - -
Ssu6g2434 353 MobiDBLite consensus disorder prediction 335 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2434 Ssu-Chr6 57090514 57091780 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2434 131 299 Receptor kinase-like Gene Family AT5G56040 31.016 1.27e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2434 - - gmx:100801034 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2434 6 57090514 57091780 Ssu6g2434 6 57090514 57091780 ECH
Ssu6g2434 6 57090514 57091780 Ssu1g3105 1 81358755 81361085 PCT