Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3105 ATGGTCTTGTGTAGGTGTGTCTGTATTTTGATTGGaaggaaggagaaaaacaaGGGTACTGAACGATCTTCAAGAGGGGGGCTTAAAACCCAACTTGATGATGTACAGCGCCCAGGGATTTCATCAGAGAGTCGTGATTTGAAGCCAGCCACCCTTGATGTTACAGTACACTGTGGTGTGCAGAAGAATTCAAGGTGCAATGTGAGGGTTATGAGTCTTGAGAGTCCTGTGAAGACTGAAGTGGAGGAAGCTTATGAAGGTGAAGATGAGCATGATGAGTCACCATCCATCAAGAGGGAGTTCTCTGATTTTGATCTCCAAGTCCACGAAGCTGCTGCAAGCAAAGGGGGATATGATCCATCAAATGAAGAGATAAAATACCCCAGTTTATATGAAAACCAAGCTAACATTCAACTGGGAGACAAAGACCATAAATACAGCAAAAAGAGTGATGATATAATACAAAGTGGACATGTCAGTGATCCTGGGATTGGCAAGGCTAACTTTTGGGCTTCTCCAAAGCTCAAGCGATCCTGCTCTAACTTGGAAAGAAGGGATGTACTTAGGAACACTTTTCATCTCTTTCCATCTTCTAAGTCACAGTCGTTTGAGGATTTGCAGGAATTATCAGCATATCAGATGGTTAATCTAGAAAGCCCCAGGTCTGTGATGACTCACTGCAGTGCTGATAGAGTGATGTTGAAAAAGCATTCGTCAAGTCAAGTTCTCCCTTCTAGAAGTAAAAGATTGTGGTGGAGGTTGTTCCTCTGGAGCCACAGGAATATACATAGATCTCAGTTAAGCAAGCCAACACAAATACATCCTGCAAGTGCTGCTCTAAAGGGTCATTGTGGGTACTCCTCAGACACCCTTGAACCAAAACAAGGCAAGGCATTGGGACAAGTAGAATCGCCCTCACCCGGGTCATCTTTTGGGGAATACTTTCACAAAAGCTGTGATGACAAAAATACTGATAACCAAAGGTGGAGCAGATTTCAGAAAGAGAATTTTGGTTTTTGGCCACAAAACCAATGGGTAGCTTTTTCAACAGAATCATCCTCCTTTAGCAGAGTGGATGACTGGGTGAAAGATCTCGAAATTCAGCAGCCACCTCCTGAGGAtgattttgatgatgacaataTTGGAAGCATTGCCTTCCCACCTTCTCCTGATGCCATCCCACAATTCATAGCATCCTCAAGCACAGCTCAGTTGGTTCGGCATCCAGATGCCAATCTTTCAAAGGAGATATTGAATGCCAATAGTGTGGTTCAGTCCCTGAACCCAGCCTCAACTGCAGCTCATATATCAGGCATTGGTATAAAAGCCATCCCCACTATTTCACACTTCTCCACTCTCCGGTCTGTCAATTTGTCAAGCAATCTAGTAGTTCACATCACGCCTGGATTTCTCCCAAAGGGTATTCATACACTGAATCTGTCAAGAAACAAAATCAGCACCATTGAGGGCCTCAGAGAATTAACCCGGCTGCGGGTACTTGACTTAAGTTATAACCGCATCTCAAGAATTGGACAAGGGTTATCAAATTGTACCCAAGTCAAAGAGCTATATCTTGCGGGAAACAAGATAAGTGATGTTGAGGGGCTACACAGGTTATTGAAGCTAAAAGTTCTGGACTTGAGCTTTAACAAGATTGCAACAACAAAAGCATTAGGCCAGCTGGTGGCTAACTACAACTCACTTCAGGCCCTGAATCTGCTTGGAAATCCAATTCAAAGCAACATCAGTGATGACCAGCTGCGCAAAGTAGTTTGTGGTCTTCTTCCAAAGCTTGTGCACCTTAACAAGCAATGTATCAAGCCTCAAAGGGGACGAGAAATACTCACTGATAGTGTTGCCAAAGCTGCACTTGGGAACAGCAGCCGGAGCTCCCACAGAAGAGCACTAAAGAAAGGTGGTGGCCAAGGAGGGTCAAGTTCCTCCAGTCTGCATAGAAGCAGTGCTAGTGTTTCTCAGAAAAGCAGGAACAGGTCAAGGAGCGGAACTAAACATCATTAG 2019 0.4368 MVLCRCVCILIGRKEKNKGTERSSRGGLKTQLDDVQRPGISSESRDLKPATLDVTVHCGVQKNSRCNVRVMSLESPVKTEVEEAYEGEDEHDESPSIKREFSDFDLQVHEAAASKGGYDPSNEEIKYPSLYENQANIQLGDKDHKYSKKSDDIIQSGHVSDPGIGKANFWASPKLKRSCSNLERRDVLRNTFHLFPSSKSQSFEDLQELSAYQMVNLESPRSVMTHCSADRVMLKKHSSSQVLPSRSKRLWWRLFLWSHRNIHRSQLSKPTQIHPASAALKGHCGYSSDTLEPKQGKALGQVESPSPGSSFGEYFHKSCDDKNTDNQRWSRFQKENFGFWPQNQWVAFSTESSSFSRVDDWVKDLEIQQPPPEDDFDDDNIGSIAFPPSPDAIPQFIASSSTAQLVRHPDANLSKEILNANSVVQSLNPASTAAHISGIGIKAIPTISHFSTLRSVNLSSNLVVHITPGFLPKGIHTLNLSRNKISTIEGLRELTRLRVLDLSYNRISRIGQGLSNCTQVKELYLAGNKISDVEGLHRLLKLKVLDLSFNKIATTKALGQLVANYNSLQALNLLGNPIQSNISDDQLRKVVCGLLPKLVHLNKQCIKPQRGREILTDSVAKAALGNSSRSSHRRALKKGGGQGGSSSSSLHRSSASVSQKSRNRSRSGTKHH 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3105 672 MobiDBLite consensus disorder prediction 641 663 - -
Ssu1g3105 672 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 4 671 - -
Ssu1g3105 672 MobiDBLite consensus disorder prediction 625 672 - -
Ssu1g3105 672 Gene3D Ribonuclease Inhibitor 513 610 IPR032675 -
Ssu1g3105 672 Pfam Leucine rich repeat 452 507 IPR001611 GO:0005515
Ssu1g3105 672 PANTHER NISCHARIN RELATED 4 671 - -
Ssu1g3105 672 MobiDBLite consensus disorder prediction 24 38 - -
Ssu1g3105 672 SUPERFAMILY Outer arm dynein light chain 1 443 607 - -
Ssu1g3105 672 SMART LRR_typ_2 450 472 IPR003591 -
Ssu1g3105 672 SMART LRR_typ_2 494 517 IPR003591 -
Ssu1g3105 672 SMART LRR_typ_2 539 561 IPR003591 -
Ssu1g3105 672 Gene3D Ribonuclease Inhibitor 389 512 IPR032675 -
Ssu1g3105 672 ProSiteProfiles Leucine-rich repeat profile. 541 562 IPR001611 GO:0005515
Ssu1g3105 672 Pfam Leucine Rich repeat 541 552 IPR001611 GO:0005515
Ssu1g3105 672 MobiDBLite consensus disorder prediction 18 46 - -
Ssu1g3105 672 ProSiteProfiles Leucine-rich repeat profile. 474 495 IPR001611 GO:0005515
Ssu1g3105 672 SMART LRR_sd22_2 494 516 - -
Ssu1g3105 672 SMART LRR_sd22_2 472 493 - -
Ssu1g3105 672 SMART LRR_sd22_2 539 560 - -
Ssu1g3105 672 SMART LRR_sd22_2 517 538 - -
Ssu1g3105 672 ProSiteProfiles Leucine-rich repeat profile. 496 518 IPR001611 GO:0005515
Ssu1g3105 672 ProSiteProfiles Leucine-rich repeat profile. 519 540 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3105 Ssu-Chr1 81358755 81361085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3105 445 571 Receptor kinase-like Gene Family AT4G08850 34.058 3.73e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3105 - - gmx:100810094 1121.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3105 1 81358755 81361085 Ssu1g3105 1 81358755 81361085 ECH
Ssu6g2434 6 57090514 57091780 Ssu1g3105 1 81358755 81361085 PCT