Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2429 ATGTCAGGTGGTGGATGCAGCATAGTGTGGTTCAGGAGAGATCTGAGGGTGGAGGATAACCCTGCCCTGGCTGCAGGAGTGAGAGCAGGAGCTGTGGTTGCTGTTTTCATATGGGCTCCTGAGGAAGAGGGTCAATACTACCCTGGCAGGGTCTCTAGGTGGTGGCTCAAACAAAGTTTGGCTCACCTTGATTCCTCTTTGAGAAGCCTTGGCACTCCTCTAATCACCAAGCGTTCCACTAATAGTGTTTCTTCTCTGTTGGAGGTTGTCAAGTCCACTGGGGCTACTCAACTCTTTTTCAACCATTTATATGATCCATTGTCACTTGTGAGGGATCACCGAGCAAAGGAGGTTCTGACTGCTCAAGGCATTACCGTACGTTCCTTCAACTCGGACTTATTGTATGAACCATGGGATGTGAACAATGCTCATGGCCAACCGTTCACAACTTTTGCTGCTTTTTGGGAAAGATGCCTCAGCATGCCTTATGACCCACAAGCACCTCTTCTCCCACCTAAAAGGATTATTCCAGGTGATGTATCTAGGTGCCCTTGTGATACATTGGTGTTTGAAGACGAATCAGAGAAGGCAAGCAACGCGCTTCTTGCTCGGGCATGGTCACCGGGGTGGAGCAATGCTGACAAGGCATTGACAGCATTCATAAACGGTCCTCTGATTGAGTACTCAAAGAATCGCAGGAAGGCTGATAGTGCCACCACCTCCTTTCTCTCACCACATTTGCACTTTGGTGAGGTGAGTGTGAAGAAAGTGTTCCACCTTTTCCGCATTAAGCAAGTGTTTTGGGCCAATGAAGGAAACAAGGCTGGTGAAGAGAGTGTGAACTTGTTTCTCAAGTCCATTGGTCTTAGAGAGTATTCAAGGTACATTAGTTTCAACCACCCCTATAGCCATGAAAGGCCCCTTTTAGGCCACCTTAAGTTTTTCCCTTGGGTGGTGAATGAAGGGTACTTTAAGGCTTGGAGACAAGGCAGGACAGGGTACCCTTTGGTGGATGCTGGAATGAGAGAGTTGTGGGCAACTGGTTGGTTGCACGATCGGATACGTGTTGTCGTTTCCAGTTTCTTTGTGAAGATCTTGAGAGTGATGCTCTTGGTTGGCAGTACATATCTGGTACATCTCCCTGATGGTCGAGAATTTGACCGAATAGATAATCCACAGTTTGAGGGGTACAAATTTGACCCAAATGGAGAATATGTACGACGCTGGCTTCCTGAACTTGCTAGATTACCAACTGAATGGATACACCATCCATGGAATGCACCAGAGTCTGTACTCCAAGCTGCTGGAATTGAACTTGGATCAAATTACCCTCTTCCCATTGTGGGAATAGATGCAGCCAAAGTAAGACTGCAAGAAGCACTTATACAAATGTGGCAACAAGAAGCAGCTTCTAGAGCTGCAATGGAAAATGGAACCGAGGAAGGGCTTGGAGACTCATCTGAATCAACCCCTATTGCTTTTCCTCAAGACATACACATGGAGGAAAGACCTGAACCTGTAAGGAACAACCCGCCTCACGGTACTCGGCGCTATGAGGATCAGATGGTCCCAAGTATCACTTCTTCCCATGTGAGAGTGGAAGAGGAAGAAACGTCTTCAGACCTTCGAAACTCAGCAGCAGACAGCAGAGCTGAAGTGCCTATAAATGTGAGCACACAACAGAATGCAAGAGAGACAGTGAATCAAGGAGTGTTGCAGACTGTAAATAGAAACACTCGAGTACAGAATAATGCTACAATGTGGCTGAGAAATGCAGCTGAAGATTCCACAGCAGAATCTTCAAGTAGTACTAGGAGAGAAAGGGATGGGGGTGTAGTTCCAGTATGGTCCCCCCCAGCTTCTAACTTCTCAGAACAATTTGTAGATGAATGA 1893 0.4691 MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVAVFIWAPEEEGQYYPGRVSRWWLKQSLAHLDSSLRSLGTPLITKRSTNSVSSLLEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQGITVRSFNSDLLYEPWDVNNAHGQPFTTFAAFWERCLSMPYDPQAPLLPPKRIIPGDVSRCPCDTLVFEDESEKASNALLARAWSPGWSNADKALTAFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVKKVFHLFRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKILRVMLLVGSTYLVHLPDGREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLQEALIQMWQQEAASRAAMENGTEEGLGDSSESTPIAFPQDIHMEERPEPVRNNPPHGTRRYEDQMVPSITSSHVRVEEEETSSDLRNSAADSRAEVPINVSTQQNARETVNQGVLQTVNRNTRVQNNATMWLRNAAEDSTAESSSSTRRERDGGVVPVWSPPASNFSEQFVDE 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2429 630 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 194 468 IPR036134 -
Ssu6g2429 630 MobiDBLite consensus disorder prediction 500 515 - -
Ssu6g2429 630 PRINTS DNA photolyase signature 143 159 IPR002081 -
Ssu6g2429 630 PRINTS DNA photolyase signature 352 370 IPR002081 -
Ssu6g2429 630 PRINTS DNA photolyase signature 332 348 IPR002081 -
Ssu6g2429 630 Pfam DNA photolyase 7 163 IPR006050 -
Ssu6g2429 630 MobiDBLite consensus disorder prediction 500 550 - -
Ssu6g2429 630 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 379 - -
Ssu6g2429 630 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 380 482 - -
Ssu6g2429 630 MobiDBLite consensus disorder prediction 589 630 - -
Ssu6g2429 630 Gene3D - 134 293 - -
Ssu6g2429 630 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Ssu6g2429 630 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Ssu6g2429 630 Pfam Blue/Ultraviolet sensing protein C terminal 491 605 IPR020978 -
Ssu6g2429 630 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 6 461 IPR014134 GO:0009785|GO:0009882
Ssu6g2429 630 PANTHER CRYPTOCHROME 1 376 IPR002081 -
Ssu6g2429 630 Gene3D HUPs 8 206 IPR014729 -
Ssu6g2429 630 PANTHER CRYPTOCHROME 379 579 IPR002081 -
Ssu6g2429 630 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 178 IPR036155 -
Ssu6g2429 630 Pfam FAD binding domain of DNA photolyase 283 377 IPR005101 -
Ssu6g2429 630 Pfam FAD binding domain of DNA photolyase 384 460 IPR005101 -
Ssu6g2429 630 PANTHER CRYPTOCHROME-1 1 376 - -
Ssu6g2429 630 PANTHER CRYPTOCHROME-1 379 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2429 Ssu-Chr6 57023489 57027501 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2429 K12118 - gmx:100786551 1174.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2429 6 57023489 57027501 Ssu6g2429 6 57023489 57027501 ECH
Ssu6g2429 6 57023489 57027501 Ssu1g3101 1 81276604 81279904 PCT