Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3101 ATGTCAGGTGGTGGATGCAGCATAGTGTGGTTTAGAAGAGATCTGAGGATAGAGGACAACCCAGCACTGACGGCAGGAGTGAGAGCTGGTGCTGTGGTTGCGGTTTTCATATGGGCACCTGAAGAAGAAGGCCAATACTACCCTGGCAGGGTCTCAAGGTGGTGGCTTAAACACAGTTTGGCTCATCTTGATTCCTCTTTGAGGAATCTAGGCACTCCTCTCATCACGAAGCGATCCACTGATACTGTTTCTTCTCTACTTGAGGTTGTTAAGTCCACTGGAGCTACTCaactcttttttaatcatttatatgATCCCTTGTCACTTATCAGGGATCACCGAGCAAAAGAGGTTCTGACAGCTCAGGGCATAGCAGTACGTTCCTTCAACGCGGATTTATTATATGAACCATGGGATGTGAATGATGCCCATGGCCGACCATTCACAACTTTTGATGCTTTTTGGGAAAGATGTCTTGGCATGCCTTATGACCCCGAGTCACCTCTTCTCCCACCTAAAAGGATAATTTCAGGTGATGTATCGATGTGTCCTTGTGATACATTGGTGTTTGAAGATGAATCAGAGAAGGCTAGCAATGCTCTTCTAGCTCGAGCATGGTCACCTGGGTGGAGCAATGCTAACAGGGCATTGACCACATTCATAAATGGTCCACTGATTGAGTACTCAAAAAATCGCAGGAAGGCAGACAGTGCCACTACCTCGCTTCTCTCACCCCATTTGCATTTTGGTGAGGTGAGTGTCAAGAAGGTCTTCCATCTTGTCCGCATCAAACAAGTTTTGTGGGCCAACGAAGGAAACAAAGCCGGTGAAGAGAGCGTGAACTTGTTCCTCAAATCTATAGGTCTTAGAGAATATTCAAGGTACATTAGTTTCAACCACCCCTACAGTCATGAAAGGCCTCTTCTAGGCCACCTCAAGTTCTTTCCTTGGGTTGTAAATGAAGGCTATTTTAAGGCGTGGAGACAAGGCAGAACTGGGTACCCGTTGGTGGATGCTGGGATGAGGGAGTTGTGGGCAACTGGTTGGCTGCATGATCGTATACGTGTTGTAGTTTCCAGTTTCTTTGTGAAGGTTCTGCAGCTTCCTTGGAGATGGGGAATGAAATATTTCTGGGATACCCTTTTGGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAGTACATATCTGGTACTCTCCCTGATGGTCGTGAATTGGACCGAATAGATAATCCACAGTTTGAGGGCTACAAATTTGACCCCAATGGAGAATATGTGCGACGCTGGCTTCCAGAACTTGCAAGATTACCAACTGAGTGGATACACCATCCTTGGAATGCCCCAGAATCAGTGCTACAAGCTGCTGGAATTGAACTAGGATCTAACTATCCTCTTCCAATTGTGGGAATAGATGCAGCAAAAACCAGATTACAAGAAGCACTATCAGAAATGTGGCAGCAAGAGGCAGCTGCAAGAGCTGCAATGGAAAATGGAACTGAGGAAGGACTCGGAGACTCTTCTGAATCAGTTCCTGCTGCTTTTCCTCAAGACACACAAATGGAGGAAACTCATGAACCTGTTAGGAACAATCCCCTTCCTGTTGCTCGGCGCTATCAGGATCAGATGGTTCCAAGCATCACTTCCTCACTGGTGAGAGTGGAAGAGGAAGAAACTACTTCTGATCTTCGAAACTTGGCAGAAGAGAGCAGCAGAGCTGAAGTGCCAGTAAATGTAAATACACAACATAATGCAGGAGTTACATTGAATGAACGGATGTTGCAGACTGCTCATAGGAATACACGAGTACAATACAATGCTACAATGGAGCTGAGAAATGTAGCTGAAGATTCTGCAGTAGAATCTTCAGGTGGTACCAGGAGAGAAAGGGATGGAGGTGTAGTTCCAGAATGGTCTCCCCCAGCTTCCAGTTACTCAGAACAATTTGTAGGTGATGAAAATGGTATAACAAGCAGTCCATCTTACATGCAAAGGCATCCTCAGTCTCACCAATTACTGAATTGGAGGCGGCTACCTCAGACTGGGTGA 2046 0.458 MSGGGCSIVWFRRDLRIEDNPALTAGVRAGAVVAVFIWAPEEEGQYYPGRVSRWWLKHSLAHLDSSLRNLGTPLITKRSTDTVSSLLEVVKSTGATQLFFNHLYDPLSLIRDHRAKEVLTAQGIAVRSFNADLLYEPWDVNDAHGRPFTTFDAFWERCLGMPYDPESPLLPPKRIISGDVSMCPCDTLVFEDESEKASNALLARAWSPGWSNANRALTTFINGPLIEYSKNRRKADSATTSLLSPHLHFGEVSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRELDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKTRLQEALSEMWQQEAAARAAMENGTEEGLGDSSESVPAAFPQDTQMEETHEPVRNNPLPVARRYQDQMVPSITSSLVRVEEEETTSDLRNLAEESSRAEVPVNVNTQHNAGVTLNERMLQTAHRNTRVQYNATMELRNVAEDSAVESSGGTRRERDGGVVPEWSPPASSYSEQFVGDENGITSSPSYMQRHPQSHQLLNWRRLPQTG 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3101 681 Gene3D HUPs 8 206 IPR014729 -
Ssu1g3101 681 Pfam Blue/Ultraviolet sensing protein C terminal 511 626 IPR020978 -
Ssu1g3101 681 PANTHER CRYPTOCHROME 1 597 IPR002081 -
Ssu1g3101 681 MobiDBLite consensus disorder prediction 551 572 - -
Ssu1g3101 681 MobiDBLite consensus disorder prediction 640 681 - -
Ssu1g3101 681 Pfam DNA photolyase 7 160 IPR006050 -
Ssu1g3101 681 PANTHER CRYPTOCHROME-1 1 597 - -
Ssu1g3101 681 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 194 488 IPR036134 -
Ssu1g3101 681 MobiDBLite consensus disorder prediction 613 681 - -
Ssu1g3101 681 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 6 482 IPR014134 GO:0009785|GO:0009882
Ssu1g3101 681 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 176 IPR036155 -
Ssu1g3101 681 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Ssu1g3101 681 Pfam FAD binding domain of DNA photolyase 283 481 IPR005101 -
Ssu1g3101 681 Gene3D - 134 293 - -
Ssu1g3101 681 MobiDBLite consensus disorder prediction 554 568 - -
Ssu1g3101 681 Coils Coil 470 490 - -
Ssu1g3101 681 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Ssu1g3101 681 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Ssu1g3101 681 PRINTS DNA photolyase signature 332 348 IPR002081 -
Ssu1g3101 681 PRINTS DNA photolyase signature 352 370 IPR002081 -
Ssu1g3101 681 PRINTS DNA photolyase signature 391 405 IPR002081 -
Ssu1g3101 681 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3101 Ssu-Chr1 81276604 81279904 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3101 K12118 - gmx:100797839 1310.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3101 1 81276604 81279904 Ssu1g3101 1 81276604 81279904 ECH
Ssu6g2429 6 57023489 57027501 Ssu1g3101 1 81276604 81279904 PCT