Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2422 ATGAGAAACGAAGAGCCAGGAACGTGGTCGAACGGGGTTCCCAATCTTAATGCACTCAACAGCCTTCACGGTGGCCACGTCACGTCACTGCCTTCGAGTGCTTTCTCCAACGGGTTCCCGATGTGGGGCGAGAACAGCGTGATCAATGATAATGATGTTGATGTGCTATTGTCTAATGATTTTTCTAGAATGAGTGTTTATCGTGAACAAGGGAACGTTGGTGCCAAAAACAGGGGATATGGATGTGGTGTTATGGACTCATCATACACACATGCATTCTCACACTCACACACACCTTGTTGTTCTTTGGATGCACATGCACATGCACATGCACATGTTCGTGAAGAAATGGGTACCCCGTCATTTACTTGGGGTGTGTCAGTTTCTTCTGATGTGAAGGGACACACTTTTGGACCCTCGATGGAATCTTCCTCTCTTACCCAAAGGAGGAGGAGCACTTGTTATGGACACGTTCCACTGCAGAACCCATTTCATGCTAGAAGGCCTTTTGCAATGGGTTGTGATGTGAAAAGTCCCTTTATGTTCTCTCAAACCATGATGCAACAACCCAAGCTTGCTTTGAATGTGAACGCCCCATCTTCACATTACTTCCCTGCAGCAAAAGAAAGAGCAACGAGGGTAACTGTAACCCCCAATAGTGAATTTTCACATTCTAGAGGGGACCCTGTGGCGTTTCAATGTGACAGTGGTTTTATCGTGCAAGAGAAAGATGTGAGATGCTGTGTTGGTAGAGGGTGCAATTCTTTGTGGGGTTGCAAAGAGAGTTTACGTTTACCCCATGAGGAAGTTCCTCAACTCATGATTTCTTCTCGGGTTCCTACTAGACATGAAAAGAACAGCAACAGCATTCTTGCAAGTGATGTTTCTCTTTCTCCGCGGCCCTTgttcaattttggtccttcGGTTAAGTTCCAAGGTTACATTTATCACCTGGCAAAGGATCAGAACGGTTGTCGCTTCCTGCAGAGGATGGTTGATGAGGGCACCTCTGAAGATACGCAGATAGTGTTTGATGGAGTCATAGATGATGTTGTTGAGCTCATGATGGACCCATTTGGGAACTACCTTGTGCAAAAGCTGCTAGATATGTGTGGAGAAGACCAAAGGTTGCAGattgtgtcaatgttgactAAAGAACCAGGGCTGCTAGTCAAAACCTCTTTGAATACACACGGCACAAGGGTGGTTCAGAAGTTGATTGCAACTGTCAGCTCTAGAAAACAAATTGCTTTGCTGAGGTCCGCCATTCAACCTGGTTTTCTTGATCTTATTAAGGATCTGAATGGAAATCATGTCATACAGCGTTGCTTGCAATACTTTAGCTGTAAAGATAATGAGTTTATTTTTGATGCTGCTACAAAGTTTTGTGTTGATATAGCTACTCATCAACATGGGTGTTGTGTACTACAACGTTGCATTGATTATTCCACCGGAAAGTACCAAGATAAGCTGGTGAAGGAAATTTGCAAACATGGGCTTATTCTTGCTCAAGATCCATTTGGaaattatgTTGTCCAGTATATTATAGAGATGGAGAACCCAAGTGCCTCGTCCAAACTGCATTCTCAGTTCAAAGGGAACTATGTAAACCTTTCCATGCAAAAGTTTAGCAGTCATGTGGTTGAAAAATGCCTCGTGCATGTTGCAGAGAGCAGGTCGAGGATAGTCCAAGAATTGTTGTCTTTTCCTCACTTTGAGCAGTTGCTACCAGACCCGTATGCCAACTATGTTGTTCAACGTGCACTCGGAGTGACCAAGGGCTCTCTGCATGCATCTCTAGTCGAAGCAGTTCGCCCCTACAAAATCTTGCGCACCAGCCCTTATTGTAAAAGGATTTTCTCCAGGAACCTGCTTAATAAGTGA 1884 0.4363 MRNEEPGTWSNGVPNLNALNSLHGGHVTSLPSSAFSNGFPMWGENSVINDNDVDVLLSNDFSRMSVYREQGNVGAKNRGYGCGVMDSSYTHAFSHSHTPCCSLDAHAHAHAHVREEMGTPSFTWGVSVSSDVKGHTFGPSMESSSLTQRRRSTCYGHVPLQNPFHARRPFAMGCDVKSPFMFSQTMMQQPKLALNVNAPSSHYFPAAKERATRVTVTPNSEFSHSRGDPVAFQCDSGFIVQEKDVRCCVGRGCNSLWGCKESLRLPHEEVPQLMISSRVPTRHEKNSNSILASDVSLSPRPLFNFGPSVKFQGYIYHLAKDQNGCRFLQRMVDEGTSEDTQIVFDGVIDDVVELMMDPFGNYLVQKLLDMCGEDQRLQIVSMLTKEPGLLVKTSLNTHGTRVVQKLIATVSSRKQIALLRSAIQPGFLDLIKDLNGNHVIQRCLQYFSCKDNEFIFDAATKFCVDIATHQHGCCVLQRCIDYSTGKYQDKLVKEICKHGLILAQDPFGNYVVQYIIEMENPSASSKLHSQFKGNYVNLSMQKFSSHVVEKCLVHVAESRSRIVQELLSFPHFEQLLPDPYANYVVQRALGVTKGSLHASLVEAVRPYKILRTSPYCKRIFSRNLLNK 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2422 627 ProSiteProfiles Pumilio RNA-binding repeat profile. 346 381 IPR001313 GO:0003723
Ssu6g2422 627 ProSiteProfiles Pumilio RNA-binding repeat profile. 422 457 IPR001313 GO:0003723
Ssu6g2422 627 Pfam Pumilio-family RNA binding repeat 351 383 IPR001313 GO:0003723
Ssu6g2422 627 Pfam Pumilio-family RNA binding repeat 427 457 IPR001313 GO:0003723
Ssu6g2422 627 Pfam Pumilio-family RNA binding repeat 315 347 IPR001313 GO:0003723
Ssu6g2422 627 Pfam Pumilio-family RNA binding repeat 578 589 IPR001313 GO:0003723
Ssu6g2422 627 Pfam Pumilio-family RNA binding repeat 463 496 IPR001313 GO:0003723
Ssu6g2422 627 Pfam Pumilio-family RNA binding repeat 391 417 IPR001313 GO:0003723
Ssu6g2422 627 Pfam Pumilio-family RNA binding repeat 534 567 IPR001313 GO:0003723
Ssu6g2422 627 Pfam Pumilio-family RNA binding repeat 502 521 IPR001313 GO:0003723
Ssu6g2422 627 PANTHER PUMILIO-FAMILY RNA-BINDING REPEATPROTEIN 6 627 - -
Ssu6g2422 627 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 286 627 IPR033133 GO:0003723
Ssu6g2422 627 SUPERFAMILY ARM repeat 311 621 IPR016024 -
Ssu6g2422 627 SMART pum_5 385 420 IPR001313 GO:0003723
Ssu6g2422 627 SMART pum_5 422 457 IPR001313 GO:0003723
Ssu6g2422 627 SMART pum_5 310 345 IPR001313 GO:0003723
Ssu6g2422 627 SMART pum_5 346 381 IPR001313 GO:0003723
Ssu6g2422 627 SMART pum_5 530 564 IPR001313 GO:0003723
Ssu6g2422 627 SMART pum_5 494 529 IPR001313 GO:0003723
Ssu6g2422 627 SMART pum_5 458 493 IPR001313 GO:0003723
Ssu6g2422 627 SMART pum_5 567 602 IPR001313 GO:0003723
Ssu6g2422 627 ProSiteProfiles Pumilio RNA-binding repeat profile. 458 493 IPR001313 GO:0003723
Ssu6g2422 627 CDD Pumilio 313 622 IPR033712 GO:0003723
Ssu6g2422 627 ProSiteProfiles Pumilio RNA-binding repeat profile. 494 529 IPR001313 GO:0003723
Ssu6g2422 627 Gene3D - 308 625 IPR011989 -
Ssu6g2422 627 ProSiteProfiles Pumilio RNA-binding repeat profile. 565 602 IPR001313 GO:0003723
Ssu6g2422 627 ProSiteProfiles Pumilio RNA-binding repeat profile. 382 420 IPR001313 GO:0003723
Ssu6g2422 627 ProSiteProfiles Pumilio RNA-binding repeat profile. 310 345 IPR001313 GO:0003723
Ssu6g2422 627 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 6 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2422 Ssu-Chr6 56764594 56770141 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2422 - - gmx:100788865 915.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2422 6 56764594 56770141 Ssu6g2422 6 56764594 56770141 ECH
Ssu6g2422 6 56764594 56770141 Ssu1g3094 1 80956175 80959386 PCT