Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3094 ATGGAGGCCCCCATGAGCCTGAGAATGCTGAAGATGTCAGACGACAAGAAGAGAAGCGCCGCAGAGGAGTCAGACGCGAGGTTCGTTGGGATTCCCAATGCGCCAACCCCAACCCCAACCCCAacaccaacaccaacaccaaCATGTCTCCGCGTCCTTCACCCTGACCACGTGGCCGTTGGGTCCCCCATCACCAGGGTCCCTCTCGCTCCTCCCACCCCTTTCCCCAACGGGTCCCCATATTCGGCACCACCTCCCTCTCCCAAATTGTGGCTCGACCCAGACCCCCCCACTCTCGGTGACCCCAACTGGGCCCACGATCTCGCCCTCGCCAACGATTTCTCCGGAATGAACATCGGAACTCAAACCGATATCGACCCCTACAACCTTTCTTGTTTCAATGAAACAGGAACCCTCCCGTACCACCAGCATGTTAACAACGCGGGTTTGTTCGAGAAAGGTTACGCTTTTGGCGCCGCAGATGATCACGCCAACCACGTGTATCATCACCTCGTGGACCAGAGGAGGAAGCAGCTACACGGCACAAGTAGTAACGGCTATCAGATTCTTCGCGATCGTTATCTCTCTCCACAGCCTCTAGGAGGGGTCAAAAGCCCCGTTAGGTTCTCTCAGATAACGCCACTCAATAGTCCCAATGTCAATAATGCATCGCATTATTACGTTGCGGCAAAAGAAAAGGCTGAACTTCCACATTTTCTGTCTCCAAGGAGGGTTGGGGCTGACCCTGCAGCGTTTAAGTGTGACAATAGTATTATCTTCCAAGGGAGAGATGTAAAACACTGCTTTGACAACGGGTACGGTTCTTATAGAAGGAGTCCCCGTGACGAGGCTGCAATTCAAGGCGTGGGTGGGAGTGTTTCTAGGAACTTTTTTCCTGCTGCTCCTTCTGGTCAAAACAACGGTGATTTCACACTGCCCATGCTGCTGGATTTTTATTCCGTGCCGGACGTGCAGTACTACATATACAACCTGGCAAAGGATCAGAACGGTTGTCGTTTTCTGCAGCGGATGGTGGATGAAGGGACCTACCAGGATATGTGTATGGTATTTGAGGGAATCATTGGGAGTGTTGTGGAACTTATGGTAGACTCTTTCGGGAATTATCTTGTGCAGAAGTTGCTGGATGTTTGCAGCGATAATCAACGGCTGCAGATTGTGCTCATGCTGACTAATCAACCAGGCCAGCTCGTTCGAATCTCTTTAAATACTCACGGCACACGTGTGGTGCAGAAGTTGATTGAGACCCTCAACTCCGTGGAGCAAATTTCATTGGTGAAGTCCGCCATTCAACCGGGTTTTCTTCATCTTATTAAGGATTTGAATGGAAATCACGTCATTCAACGTTGCTTGCAATGCCTTTCCTGTCAAGATAATCAGTTTATTTTTGATGCTGCTGTGAGGTTTTGTGTTGAAATAGCTACTCATCGACATGGATGTTGTGTACTGCAACGTTGCATTGATTACTCCGTGGGAAAGAATCGAGATAAGCTGGTCATGGAAATAATCAAATATGGATTTCTCCTCTCTCAGGATCCATTTGGAAATTATGTTGTTCAGTACGTTATAGAGGCGGATACCCCAACTGCCTCAGCCAGACTGCTGAGTCAGTTCAAAGGGAACTATGTAAACTTGTCTACACAGAAATTTAGTAGTCACGTGGTTGAAAAATGCCTTAGGCATGTTGGAGACAGCAGGTCAAAGATAGTTCGAGAATTGCTGTCTACTCCTCGTTTTGAACAGTTGTTGCAAGACCCATATGCCAATTATGTCATTCAATCTGCTCTCGCTGTCACCAAGGGTCCTCTTCATGCATCTTTGGTTGAAGCAGTACGTCCTCACAAAATGTTGCGCACCAGTCCATATTGTAAGAGGATTTTCTCGGGAAGTCTGCTCAAGAAGTGA 1923 0.481 MEAPMSLRMLKMSDDKKRSAAEESDARFVGIPNAPTPTPTPTPTPTPTCLRVLHPDHVAVGSPITRVPLAPPTPFPNGSPYSAPPPSPKLWLDPDPPTLGDPNWAHDLALANDFSGMNIGTQTDIDPYNLSCFNETGTLPYHQHVNNAGLFEKGYAFGAADDHANHVYHHLVDQRRKQLHGTSSNGYQILRDRYLSPQPLGGVKSPVRFSQITPLNSPNVNNASHYYVAAKEKAELPHFLSPRRVGADPAAFKCDNSIIFQGRDVKHCFDNGYGSYRRSPRDEAAIQGVGGSVSRNFFPAAPSGQNNGDFTLPMLLDFYSVPDVQYYIYNLAKDQNGCRFLQRMVDEGTYQDMCMVFEGIIGSVVELMVDSFGNYLVQKLLDVCSDNQRLQIVLMLTNQPGQLVRISLNTHGTRVVQKLIETLNSVEQISLVKSAIQPGFLHLIKDLNGNHVIQRCLQCLSCQDNQFIFDAAVRFCVEIATHRHGCCVLQRCIDYSVGKNRDKLVMEIIKYGFLLSQDPFGNYVVQYVIEADTPTASARLLSQFKGNYVNLSTQKFSSHVVEKCLRHVGDSRSKIVRELLSTPRFEQLLQDPYANYVIQSALAVTKGPLHASLVEAVRPHKMLRTSPYCKRIFSGSLLKK 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3094 640 ProSiteProfiles Pumilio RNA-binding repeat profile. 398 433 IPR001313 GO:0003723
Ssu1g3094 640 ProSiteProfiles Pumilio RNA-binding repeat profile. 323 358 IPR001313 GO:0003723
Ssu1g3094 640 MobiDBLite consensus disorder prediction 63 88 - -
Ssu1g3094 640 ProSiteProfiles Pumilio RNA-binding repeat profile. 543 581 IPR001313 GO:0003723
Ssu1g3094 640 Gene3D - 316 637 IPR011989 -
Ssu1g3094 640 MobiDBLite consensus disorder prediction 9 24 - -
Ssu1g3094 640 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 305 640 - -
Ssu1g3094 640 MobiDBLite consensus disorder prediction 67 88 - -
Ssu1g3094 640 SUPERFAMILY ARM repeat 325 633 IPR016024 -
Ssu1g3094 640 ProSiteProfiles Pumilio RNA-binding repeat profile. 435 470 IPR001313 GO:0003723
Ssu1g3094 640 Pfam Pumilio-family RNA binding repeat 328 360 IPR001313 GO:0003723
Ssu1g3094 640 Pfam Pumilio-family RNA binding repeat 364 393 IPR001313 GO:0003723
Ssu1g3094 640 Pfam Pumilio-family RNA binding repeat 515 541 IPR001313 GO:0003723
Ssu1g3094 640 Pfam Pumilio-family RNA binding repeat 547 580 IPR001313 GO:0003723
Ssu1g3094 640 Pfam Pumilio-family RNA binding repeat 440 470 IPR001313 GO:0003723
Ssu1g3094 640 Pfam Pumilio-family RNA binding repeat 476 509 IPR001313 GO:0003723
Ssu1g3094 640 Pfam Pumilio-family RNA binding repeat 402 430 IPR001313 GO:0003723
Ssu1g3094 640 Pfam Pumilio-family RNA binding repeat 587 603 IPR001313 GO:0003723
Ssu1g3094 640 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 292 640 IPR033133 GO:0003723
Ssu1g3094 640 PANTHER PUMILIO HOMOLOG 7, CHLOROPLASTIC-RELATED 305 640 - -
Ssu1g3094 640 ProSiteProfiles Pumilio RNA-binding repeat profile. 471 506 IPR001313 GO:0003723
Ssu1g3094 640 SMART pum_5 398 433 IPR001313 GO:0003723
Ssu1g3094 640 SMART pum_5 323 358 IPR001313 GO:0003723
Ssu1g3094 640 SMART pum_5 507 542 IPR001313 GO:0003723
Ssu1g3094 640 SMART pum_5 471 506 IPR001313 GO:0003723
Ssu1g3094 640 SMART pum_5 435 470 IPR001313 GO:0003723
Ssu1g3094 640 SMART pum_5 359 394 IPR001313 GO:0003723
Ssu1g3094 640 SMART pum_5 580 615 IPR001313 GO:0003723
Ssu1g3094 640 SMART pum_5 543 577 IPR001313 GO:0003723
Ssu1g3094 640 CDD Pumilio 328 634 IPR033712 GO:0003723
Ssu1g3094 640 MobiDBLite consensus disorder prediction 1 49 - -
Ssu1g3094 640 ProSiteProfiles Pumilio RNA-binding repeat profile. 507 542 IPR001313 GO:0003723
Ssu1g3094 640 MobiDBLite consensus disorder prediction 34 48 - -
Ssu1g3094 640 ProSiteProfiles Pumilio RNA-binding repeat profile. 359 395 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3094 Ssu-Chr1 80956175 80959386 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3094 - - ccaj:109817322 893.264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3094 1 80956175 80959386 Ssu1g3094 1 80956175 80959386 ECH
Ssu6g2422 6 56764594 56770141 Ssu1g3094 1 80956175 80959386 PCT