Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2420 ATGGATTCCGGCAATAGTGGAAGTATCTCTTCAAGTGGTGACGAAGAATACGATTCACGAGCTGATCACACAGTACTCCCTTCAACCTTCCTCAATAACCACCCTACCCAATTCGGCTCCATCTCGCACCCTCTTGTTTCTTCTTCCCATTACCAACACCACCCTCACCCCTCTTTGTTCGATCTCTCTTCAAGCTACCTCCACGCCCTCTCCCACTCCCAACCGAACCCGTCAAACTCCTTCCTCAACTTAGACACCGCCACGTCATCCTCCCAACCTCAAAGATCTCAACCCGATTGCACCGTTAACGTCACCTCATCGTCACcaccacaaacaacaacaacagcaaacATAAACCAATGTTTGTTGGGTCCCCAAGTCGGCCTCGGAGAGAACAATGCAAGAGCGGCGCTATCCTCACCCCAAGCCAACAGCGTTGTCCGAAACTCAAAGAAGCGAACAAGGGCTTCAAGGAGAGCACCAACCACGGTTCTCACCACCGACACTTCGAATTTCCGAGCCATGGTCCAAGAGTTCACGGGAATCCCTGCACCACCGTTCTCAGCTTCCTCCTCTTACTCTCGCAGGCTCGATCTTCTCACAGGCTCATCCTCCTTAAGGTCTAGCAGTACCTTAGACGCCACAACGGGTACTCCTTTCTACCCTTTGCGTCCTTCACCACAAAAGGTACATCACCATCATCAGCATCATCATCAGCATCAGCATCAGCATCAAAACTCGTTGCTTTTATCTTCCTCATCATCACCTTATAATAACATGGTTGATGCTATAGCttccactaccaccaccaacaaTTCCTCGTCTAATATTAACTTCCAACAACAACTACCTCCTGATTTGGGTTTACCCTATCATGGTAACCCACACAACATCATGCTCACCATGCAGAACCACCCCACTCTTGCATTTCACCCTCCTCCACCACCTCTTCATCCTTTTGGGTTTAGTGCAAAGTTACCATCAATTGAGGATCTGGGTATGAGCCATCATGGGCAAGTGAATAATAATGCAAATTTTGTGGCAAGTGGGCATGTAACTTCTGAGGGGGTGGCACTGAGGAGTGTTAACGATGACGGAGGAGGAGGAACGAGAGATGTTTCGTTAAGGTCCTTGGATGGTGGTGGTAGCTGCAAGTTGAATTTTTCTGTCGCTTCTGCGTCCACTAGCTTGAACCATGAGAAGGACACCTtacagaataataataataacaataacaatgataataacgCTACTACTAGAGGGGAAGGTACCGTCGATTCCTGGATTTGTTCTTCTGACTAG 1302 0.4578 MDSGNSGSISSSGDEEYDSRADHTVLPSTFLNNHPTQFGSISHPLVSSSHYQHHPHPSLFDLSSSYLHALSHSQPNPSNSFLNLDTATSSSQPQRSQPDCTVNVTSSSPPQTTTTANINQCLLGPQVGLGENNARAALSSPQANSVVRNSKKRTRASRRAPTTVLTTDTSNFRAMVQEFTGIPAPPFSASSSYSRRLDLLTGSSSLRSSSTLDATTGTPFYPLRPSPQKVHHHHQHHHQHQHQHQNSLLLSSSSSPYNNMVDAIASTTTTNNSSSNINFQQQLPPDLGLPYHGNPHNIMLTMQNHPTLAFHPPPPPLHPFGFSAKLPSIEDLGMSHHGQVNNNANFVASGHVTSEGVALRSVNDDGGGGTRDVSLRSLDGGGSCKLNFSVASASTSLNHEKDTLQNNNNNNNNDNNATTRGEGTVDSWICSSD 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2420 433 MobiDBLite consensus disorder prediction 227 243 - -
Ssu6g2420 433 MobiDBLite consensus disorder prediction 205 253 - -
Ssu6g2420 433 MobiDBLite consensus disorder prediction 1 20 - -
Ssu6g2420 433 PANTHER VQ MOTIF-CONTAINING PROTEIN 1 432 IPR039609 -
Ssu6g2420 433 MobiDBLite consensus disorder prediction 400 433 - -
Ssu6g2420 433 PANTHER VQ MOTIF-CONTAINING PROTEIN 1 432 - -
Ssu6g2420 433 MobiDBLite consensus disorder prediction 71 115 - -
Ssu6g2420 433 Pfam VQ motif 159 186 IPR008889 -
Ssu6g2420 433 MobiDBLite consensus disorder prediction 138 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2420 Ssu-Chr6 56701361 56702662 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2420 - - gsj:114382008 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2420 6 56701361 56702662 Ssu6g2420 6 56701361 56702662 ECH
Ssu6g2420 6 56701361 56702662 Ssu1g3091 1 80867649 80868422 PCT