Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2419 ATGGCATCGAAGGCAAAGACCAACAAGGTGGGGAGTGAATTGGGTTGTGGTCTCATGGGGAGAATTCTCCACCTCAAAAGCCACAAGCTGAGAAAAGCTTCTGTTCACTCCCTACCCTTGAAGGCTAGCAACAATGCACAGAGTGATGATGGTGGCAAAAGTGAACCCAAGAAGGCCCCAAATGAAGAATCAAAGGTTACAGGAAAAACCTGCACTGGCACTGAGCCACACAAACTGAGTGCAGAACAGAAACCTGCCAGAAAGAGTGCCTCTAGTCACCAACAACCTTGTACATATCGAAACAATCAAAATCAGAGGCATTCTGATGTTGCAAGAAGCTCAACATCATTATCCACTGGTAGTTCAATCTCACCTCACACAAAGGTTCAACAAAACAAGGACAAGAATCATGAGAGCAAGCCACATAGAGACCCCACTGGAAATTCTCTAGCACTTGCTAGGATGAGTACTAGTCACCGGCAAGACAATGAGAACAACAAGTCTCAACTGAAACTCACTGGGAATTTGCTTGTGAATAACACCCCAAGAAGAAAGAGTGTGGAATACACGCCTAAGAATGCAGAGTTGAACTCTCTGCCCAGTTCTTACACCAATGCAAGCAAAGGCTTGATGGGGAATATCATGAGGAAGAACAGCAACAGCAATGAGGTTGCACAGTTTTTGAGTCCTAGGCTGAACAAAGTGGACCCTGAGGTGTTGAAGTCCATGGGAAATGAAGCATACATGCAGGGAAGATTCGAAGAGGCTTTGGCTTTGTATGACCGAGCCATTGCACTTGATTCAAATAAGGCAACGTATCATTGCAACAAGAGTGCAGCTTTAATTGGCTTAGGGAGGCTTCAGGAAGCAATTATTGAGTGTGAGGAATCTATCAAGTTGGACCCTTCATATGTCAGAGCCCACAACCGCTTGGCCACAATATATTTCAGGCTGGGAGAAGCAGAAAAAGCCCTGGATTGCAATCAGTCAACCTCATGTGCTGATTCAATACTTGCTCTTCAAAACCACCTTAACAAATGCACAGAAGCACGGAAAGTCAATGCATGGAGTGATGTACTAAAGGAAACACAGTGTGCAATATCCTTAGGTGCTGATTCAGCTCCACAGGTCTATGCTTTACAAACTGAAGCCTTGCTGAAGCTCCTAAGATATCAAGAGGCCTATGTCATCTACGATAAAATGCCAAAATTTTCACTTGATTGGTGTACCAAGATATTTGGCCCGGCTCGCCGTTCTTACCTGTTGATGATAGGTGCACAGATTTACTTGGCAGCCGGCAGGTTTGAGGAAGCTGTGACAGCAGCTCAGCAAGCAGCTAAAGTTGATCCAGGCAATAGAGAAGTGACTGCAGTGGTAAGGATGGCCAGAGCAGCAACATCAGCTAGAGTGAGTGGAAATTTGCTCTTCAAGGCATCAAAATTCACTGAAGCATGTGCCGTGTATAACGAAGGACTAGAACATGATCCACACAACTCAGTTCTGCTATGTAACAGAGCTGCATGTCGTTCCAAGCTTGGCCAATATGAGAAAGCAATTGAAGATTGTAACGCAGCACTTATGGTTCAGCCATGTTATAGCAAAGCAAGGTTAAGGAGGGCAGATTGCAATGCCAAGTTGGAACGGTGGGAAGCTGCTATTCAAGACTATGAAATGCTGTTAAGGGAAAGGCCAGGGAATGAGGAAGTGGCAAGGGCTTTGTTTGAAGCTCAACTCCAACTCAAGGTGCTGCGTGGTGAAGATATTAAGGACTTGAAATTTGGttcaaatttggttttcatCTCAAGTAATGATCGGTTCAGACATTATGTAACCTCACCTGGGATGGCTGTGGTTCTCTTCAGCAACAAGGCAACCCACAAGAAAGTGTTACTTGTGTTGGAGCAAACCAGCAAGAGATTCCCATCAGTTAATTTCCTCAaggtggaGATCGAAGACCACCCCTACTTAGCAAAGTCAGAAGGTGTGAGCTCTATCCCGGCcttcaaaatatacaagaaCGGATCAAGGGTTAAAGAAATTTCAGGCAACAACCACGAGTTGTTAGAAAGATCAGTTACATTGTATAGCAGCTGA 2094 0.4417 MASKAKTNKVGSELGCGLMGRILHLKSHKLRKASVHSLPLKASNNAQSDDGGKSEPKKAPNEESKVTGKTCTGTEPHKLSAEQKPARKSASSHQQPCTYRNNQNQRHSDVARSSTSLSTGSSISPHTKVQQNKDKNHESKPHRDPTGNSLALARMSTSHRQDNENNKSQLKLTGNLLVNNTPRRKSVEYTPKNAELNSLPSSYTNASKGLMGNIMRKNSNSNEVAQFLSPRLNKVDPEVLKSMGNEAYMQGRFEEALALYDRAIALDSNKATYHCNKSAALIGLGRLQEAIIECEESIKLDPSYVRAHNRLATIYFRLGEAEKALDCNQSTSCADSILALQNHLNKCTEARKVNAWSDVLKETQCAISLGADSAPQVYALQTEALLKLLRYQEAYVIYDKMPKFSLDWCTKIFGPARRSYLLMIGAQIYLAAGRFEEAVTAAQQAAKVDPGNREVTAVVRMARAATSARVSGNLLFKASKFTEACAVYNEGLEHDPHNSVLLCNRAACRSKLGQYEKAIEDCNAALMVQPCYSKARLRRADCNAKLERWEAAIQDYEMLLRERPGNEEVARALFEAQLQLKVLRGEDIKDLKFGSNLVFISSNDRFRHYVTSPGMAVVLFSNKATHKKVLLVLEQTSKRFPSVNFLKVEIEDHPYLAKSEGVSSIPAFKIYKNGSRVKEISGNNHELLERSVTLYSS 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2419 697 CDD TRX_family 606 684 - -
Ssu6g2419 697 SUPERFAMILY TPR-like 470 581 IPR011990 GO:0005515
Ssu6g2419 697 MobiDBLite consensus disorder prediction 34 184 - -
Ssu6g2419 697 Gene3D Tetratricopeptide repeat domain 235 584 IPR011990 GO:0005515
Ssu6g2419 697 Pfam Tetratricopeptide repeat 501 530 IPR001440 GO:0005515
Ssu6g2419 697 SUPERFAMILY TPR-like 237 454 IPR011990 GO:0005515
Ssu6g2419 697 Pfam Tetratricopeptide repeat 535 565 IPR019734 GO:0005515
Ssu6g2419 697 ProSiteProfiles TPR repeat profile. 237 270 IPR019734 GO:0005515
Ssu6g2419 697 MobiDBLite consensus disorder prediction 85 129 - -
Ssu6g2419 697 Pfam Tetratricopeptide repeat 426 498 - -
Ssu6g2419 697 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 1 695 IPR044534 -
Ssu6g2419 697 Pfam Thioredoxin 627 687 IPR013766 -
Ssu6g2419 697 Pfam TPR repeat 244 279 - -
Ssu6g2419 697 SUPERFAMILY Thioredoxin-like 590 685 IPR036249 -
Ssu6g2419 697 MobiDBLite consensus disorder prediction 130 144 - -
Ssu6g2419 697 ProSiteProfiles TPR repeat profile. 419 452 IPR019734 GO:0005515
Ssu6g2419 697 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 1 695 - -
Ssu6g2419 697 MobiDBLite consensus disorder prediction 167 184 - -
Ssu6g2419 697 Coils Coil 539 559 - -
Ssu6g2419 697 Gene3D Glutaredoxin 592 696 - -
Ssu6g2419 697 SMART tpr_5 533 566 IPR019734 GO:0005515
Ssu6g2419 697 SMART tpr_5 465 498 IPR019734 GO:0005515
Ssu6g2419 697 SMART tpr_5 499 532 IPR019734 GO:0005515
Ssu6g2419 697 SMART tpr_5 305 337 IPR019734 GO:0005515
Ssu6g2419 697 SMART tpr_5 419 452 IPR019734 GO:0005515
Ssu6g2419 697 SMART tpr_5 237 270 IPR019734 GO:0005515
Ssu6g2419 697 SMART tpr_5 271 304 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2419 Ssu-Chr6 56655029 56658304 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2419 K09527 - gmx:100782846 1117.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2419 6 56655029 56658304 Ssu6g2419 6 56655029 56658304 ECH
Ssu6g2419 6 56655029 56658304 Ssu1g3090 1 80837103 80840401 PCT