Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3090 ATGGCAGGGAAAGCCAAGAACAAGGTGGAGATTGAATTGGGTTGCGGTTTGGTGGGGAGAATTTTCCATCTCAAAACCAACAATAGGCCTAGAAAATCCTCTGTTCATTCACTACCCGTGAAGGCTTGCAACACTGTGCAACAGAGGGATCAGGCCAAAAACGAATCCAAAACCCCCCCAAACCATGAATCAAAGGTTCCAAGAGAAAGCTCCACAGAGAGAAAGAGCACCTCTAGTCATCGTGCACCTTCTGCATACCGAAACACTCAAAATGGGAGACCCTCAGATGCTGCAAGAACCTCAATTCAACAAAGCCAGGACTCCAATGATGAGAGTAAACAACAGAAAGAGCACGCTGGTAACTCTCTGGAACTTGCTAGGATAATTACAAGTACGGTTCATCAACAGAACAACGAGACCAAATCCCCAGCCAAAGAATTTGTGTTACCAATCACTGGGAATTTGCTTGTGAATAGCAGTCCAAGAACTAGTGTTACCAAGAGCAAAGAGTTGACCCCTATAAACGGTTTCTGTTCTTATAATAGTAACGCCAACAAAGGCGTAATGGGGAATATCATGAGGAAGAACAGTGATGAGCTTGCAAAATTTCGGAGTCCAAGGAACAACAGAGCTGACCCTGAGGTGTTGAAGTCCATGGGGAATGAAGCGTACAAGCAGGGAAGATTTGAAGAGGCTTTGGCTTTGTATGACCGAGCCATTGCTCTTGACTCCAATAAGGCAACCTATCATTGCAATAAGAGCGCAGCTTTGATAGGCTTGGGAAGGTTTCTGCAGGCAATTGCTGAGTGTGAGGAAGCTCTCCGGTTGGAGCCTTCGTATGAAAGAGCCCACACCCGTTTGGCAACGATTTATTTCAGATTGGGCGCAGCAGAAAAGGCACTAAATTGCAATGAAACAACCCCATATGTTGATTCCGCACTCGCTTTCCAAGCTCAGGCTCTTCAAAATCACCTTAGCAAATGCGCTGAAGCTCGGAAAGTCAAAGACTGGAAAGCTATATTAAAGGAAACACAGGCTGCGATATCCTTAGGTGCTGATTCAGCTCCACAGGTTTATTCTTTACAAACTGAAGCCTTGATGAAGCTCCTAAGACATCAAGAGGCATATGCTACCCACGAGAAAATGCCAAAATTTGACCTTGattgttgtaaaaaattatttggccCGGCTCGTAGTGCTTACCTATTGATGATTGGCGCGCAAATTTACTTGGCAGCCGGCAGGTTTGAGGATGCTGTGACAGCATCACAGCAAGCAGCTAAACTTGACCCAAGCAGCAGTGAGGTGAATGCAGTGGTAAGGAGGGCCAGAGCAGTGACATCAGCCAGAATGAGTGGTAACTTACTCTTCAAGGCATCAAAATTCATGGAAGCATGCGCTGTATACAATGAAGGACTAGAGCATGATCCATACAACTCAGTTCTGCTTTGCAATAGGGCAGCGTGTCGTTCTAAGCTAGGTCAATTCGAGAAAGCAATTGAAGATTGTAATGTAGCCCTTCTAGTTCAGCCTAGTTATAGCAAGGCAAGGTTTCGGAGGGCAGATTGTAATGCCAAGTTGGAACGATGGGAAGCTGCCGTTCAAGACTATGAAATGCTATTAAGAGAAAAGCCAGGGGATGAGGAGGTGGCCAGGGCTCTGTTTGAGACCCAGCTCCAACTCAAGATGCTGCGAGGAGAAGATATTAAGGACTTGAAATTTGGCTCAAATTTGGTTTTCATCTCAAGTAATGATCGGTTTAGACATTATGTAACATCACCTGGGATGTCTGTGGTGCTCTTTTGCAACAAGGCAACCCACAAGcaagtgttgttggtgttggaGCAAACTTGCAAGAGATTTCCATCAGTTAATTTCCTTAAGgtGGAGATTGAAGACCACCCCTACTTGGCAAAATCAGAAGGTGTGAACTCCATCCCAGCcttcaaaatatacaagaatGGATCAAGGGTTAAAGAAATTCCAGGCAACAACCACGACTTGTtagaaaaattagttaaattatatagcAGCTGA 2037 0.4354 MAGKAKNKVEIELGCGLVGRIFHLKTNNRPRKSSVHSLPVKACNTVQQRDQAKNESKTPPNHESKVPRESSTERKSTSSHRAPSAYRNTQNGRPSDAARTSIQQSQDSNDESKQQKEHAGNSLELARIITSTVHQQNNETKSPAKEFVLPITGNLLVNSSPRTSVTKSKELTPINGFCSYNSNANKGVMGNIMRKNSDELAKFRSPRNNRADPEVLKSMGNEAYKQGRFEEALALYDRAIALDSNKATYHCNKSAALIGLGRFLQAIAECEEALRLEPSYERAHTRLATIYFRLGAAEKALNCNETTPYVDSALAFQAQALQNHLSKCAEARKVKDWKAILKETQAAISLGADSAPQVYSLQTEALMKLLRHQEAYATHEKMPKFDLDCCKKLFGPARSAYLLMIGAQIYLAAGRFEDAVTASQQAAKLDPSSSEVNAVVRRARAVTSARMSGNLLFKASKFMEACAVYNEGLEHDPYNSVLLCNRAACRSKLGQFEKAIEDCNVALLVQPSYSKARFRRADCNAKLERWEAAVQDYEMLLREKPGDEEVARALFETQLQLKMLRGEDIKDLKFGSNLVFISSNDRFRHYVTSPGMSVVLFCNKATHKQVLLVLEQTCKRFPSVNFLKVEIEDHPYLAKSEGVNSIPAFKIYKNGSRVKEIPGNNHDLLEKLVKLYSS 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3090 678 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 1 677 - -
Ssu1g3090 678 SUPERFAMILY TPR-like 212 435 IPR011990 GO:0005515
Ssu1g3090 678 MobiDBLite consensus disorder prediction 31 54 - -
Ssu1g3090 678 Coils Coil 520 540 - -
Ssu1g3090 678 MobiDBLite consensus disorder prediction 55 76 - -
Ssu1g3090 678 MobiDBLite consensus disorder prediction 77 109 - -
Ssu1g3090 678 SMART tpr_5 400 433 IPR019734 GO:0005515
Ssu1g3090 678 SMART tpr_5 213 246 IPR019734 GO:0005515
Ssu1g3090 678 SMART tpr_5 446 479 IPR019734 GO:0005515
Ssu1g3090 678 SMART tpr_5 514 547 IPR019734 GO:0005515
Ssu1g3090 678 SMART tpr_5 480 513 IPR019734 GO:0005515
Ssu1g3090 678 SMART tpr_5 247 280 IPR019734 GO:0005515
Ssu1g3090 678 MobiDBLite consensus disorder prediction 29 120 - -
Ssu1g3090 678 Pfam TPR repeat 220 255 - -
Ssu1g3090 678 Pfam Tetratricopeptide repeat 407 480 - -
Ssu1g3090 678 Pfam Tetratricopeptide repeat 492 547 - -
Ssu1g3090 678 ProSiteProfiles TPR repeat profile. 400 433 IPR019734 GO:0005515
Ssu1g3090 678 SUPERFAMILY Thioredoxin-like 564 674 IPR036249 -
Ssu1g3090 678 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 1 677 IPR044534 -
Ssu1g3090 678 Coils Coil 669 678 - -
Ssu1g3090 678 Pfam Thioredoxin 608 672 IPR013766 -
Ssu1g3090 678 Gene3D Tetratricopeptide repeat domain 211 565 IPR011990 GO:0005515
Ssu1g3090 678 ProSiteProfiles TPR repeat profile. 213 246 IPR019734 GO:0005515
Ssu1g3090 678 SUPERFAMILY TPR-like 451 562 IPR011990 GO:0005515
Ssu1g3090 678 CDD TRX_family 587 674 - -
Ssu1g3090 678 Gene3D Glutaredoxin 573 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3090 Ssu-Chr1 80837103 80840401 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3090 K09527 - gmx:100814381 1139.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3090 1 80837103 80840401 Ssu1g3090 1 80837103 80840401 ECH
Ssu6g2419 6 56655029 56658304 Ssu1g3090 1 80837103 80840401 PCT