Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2414 ATGGGTCTCTCTTCCATTGCCATCATCGCCTTTCTTCTCATCTCCTTCCTTTTCCTCACTCTCCAACGCGCCGAGTCAACTCAGCCTCCTTATTCCTGCGACGCGTCCTCCAGCGGACGCCACCCGTTCTGCAACACCAAGCTCTCCATCACCCAGAGAGCCCAAGACCTCGTCTCGCGACTCACTCTCGACGAGAAGCTCGCCCAACTCGTCAACTCAGCGCCCTCCATTCCCCGACTCGGCATCCCGAGTTACCAGTGGTGGAGCGAAGCGCTGCACGGCGTCGCGGACGCTGGCCCCGGCATCAGATTCAACGGCACCATCAAATCCGCCACCAGCTTCCCTCAGGTCATCCTCACAGCGGCTTCATTCGACCAAACCCTCTGGTACAATATTAGTAAGGCTATTGGGACGGAAGCGAGGGCGGTTTACAATGCGGGACCAGCGATGGGGATGACGTTCTGGGCTCCGAACATTAACGTTTTCAGGGATCCGAGGTGGGGGAGGGGACAAGAGACGGCCGGGGAAGACCCTCTAATGAATGCGAAGTATGGTGTGGCGTATGTGAGGGGGCTTCAAGGGGATTCCTTTGAAGGAGGGAAACTTGGAGAGAAGCTTCAGGCTTCGGCGTGTTGCAAGCACTTTACGGCCTATGATTTGGACCAATGGAAGGGCGTGAATCGCTTTGTCTTCGATGCTCGTGTCACATTGCAAGATTTGGCCGACACCTATCAGCCTCCGTTTCAGAGTTGCATACAGCAAGGTCGAGCCAGTGGGATAATGTGTGCCTACAACCGTGTCAATGGGGTTCCAAACTGTGCAGATTTCGATCTGTTAACCACAACCGCAAGAAAACAATGGAAATTCGATGGGTATATTACATCAGATTGTGGGGCAGTTTCTATCATACACGATAAGCAAGGTTATGCAAAAACAGCAGAGGACGCTGTAGCCGATGTCTTTATGGCAGGTATGGATGTGGAGTGTGGTGATTACATAACCAAGCATGCTAAATCAGCAGTGTCGCAGAAAAAATTGCCCACATCTCAAATCGACCGTGCCCTTCAGAATCTATTCTCTATCAGAATAAGGCTAGGCCTATTCGACGGAAACCCCACCAAGCTCGCATTCGGCACGATTGGTCCCAACGAGGTGTGTTCCGAACAACACCTCCGACTGGCTCTCGAGGCAGCAAGAAACGGCATCGTCCTCTTGAAGAACGACGACTCACTTCTCCCACTTCCAAAAACAAACCCCAGCGTTTCCCTCGCGGTGATAGGCCCCAACGCCAACGCCTCGTCACTGGCTGTCCTGGGAAACTACTATGGCCGTCCTTGCAAGTTGGTGACGCTTTTGCAAGGCTTTGGGCGCTACGCCAAGGACACCATTTACCACCCTGGCTGTGAGGACGGCACGCAATGTGCCTCTGCTCAGATAGAGCAGGCAGCGGAGGTTGCGAAAAAGGTGGATTACGTGGTGCTGGTTATGGGGTTGGATCAAAGTCAGGAGAGGGAATCGCATGATCGAGAGTACCTGGGGCTGCCAGGGAAGCAAGAGGAACTCATCCAGAGTGTTGCCAAGGCTGCTAAGAGGCCAGTTGTTTTGGTGCTCTTTTGTGGGGGCCCGGTAGATATCACTTCAGCCAAGTTTGATAATAAAGTTGGAGGCATCTTCTGGGCTGGGTACCCAGGGGAACTTGGAGGAGTGGCCCTGGCCCAGGTTGTCTTTGGTGACCATAACCCAGGAGGAAGACTACCAATTACTTGGTACCCAAAAGATTTCATTAGAGTACCAATGACAGATATGAGGATGAGAGCAGATCCAGCGTCAGGCTACCCTGGGAGAACCTACCGATTTTACACTGGTCCAAAGGTGTATGAATTTGGCTACGGCCTAAGCTACACAAACTATTCCTACAAGTTCCACTCTGTCTCACAGAACACCCTCCACATCAACCAATCATCCACCCACTTGATGGCTGAAAACTCTGAAACCATCCGTTACAAGCTGGTTTCAGAGTTGGGGGAAGAAACATGCCAAAGCATGTCATTGTCGGTCACTTTGGGAGTCACAAATCAGGGTAACAAGGCGGGGAAGCATCCGGTGTTGCTGTTTTTGAGGCAGGGAAAAGTGAGAAATGGAAATCCGGTGAAACAATTGGTGGGTTTTCAAAGTGTGAAACTAGATGCAGGGGAAACTGCTCGAGTGGGATTTGAGCTAAGCCCTTGTGAGCATCTTAGCATAGCAAACGAGGCTGGTTCTGTGGTGATTGAAGAGGGGTCTTATTTGTTGCTTGTGGGGGACCAAGAGTACCCAATAAATATCAAAGTCTGA 2334 0.518 MGLSSIAIIAFLLISFLFLTLQRAESTQPPYSCDASSSGRHPFCNTKLSITQRAQDLVSRLTLDEKLAQLVNSAPSIPRLGIPSYQWWSEALHGVADAGPGIRFNGTIKSATSFPQVILTAASFDQTLWYNISKAIGTEARAVYNAGPAMGMTFWAPNINVFRDPRWGRGQETAGEDPLMNAKYGVAYVRGLQGDSFEGGKLGEKLQASACCKHFTAYDLDQWKGVNRFVFDARVTLQDLADTYQPPFQSCIQQGRASGIMCAYNRVNGVPNCADFDLLTTTARKQWKFDGYITSDCGAVSIIHDKQGYAKTAEDAVADVFMAGMDVECGDYITKHAKSAVSQKKLPTSQIDRALQNLFSIRIRLGLFDGNPTKLAFGTIGPNEVCSEQHLRLALEAARNGIVLLKNDDSLLPLPKTNPSVSLAVIGPNANASSLAVLGNYYGRPCKLVTLLQGFGRYAKDTIYHPGCEDGTQCASAQIEQAAEVAKKVDYVVLVMGLDQSQERESHDREYLGLPGKQEELIQSVAKAAKRPVVLVLFCGGPVDITSAKFDNKVGGIFWAGYPGELGGVALAQVVFGDHNPGGRLPITWYPKDFIRVPMTDMRMRADPASGYPGRTYRFYTGPKVYEFGYGLSYTNYSYKFHSVSQNTLHINQSSTHLMAENSETIRYKLVSELGEETCQSMSLSVTLGVTNQGNKAGKHPVLLFLRQGKVRNGNPVKQLVGFQSVKLDAGETARVGFELSPCEHLSIANEAGSVVIEEGSYLLLVGDQEYPINIKV 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2414 777 Gene3D Immunoglobulins 635 776 IPR013783 -
Ssu6g2414 777 SMART Fn3_like_2 700 770 IPR026891 -
Ssu6g2414 777 Pfam Glycosyl hydrolase family 3 C-terminal domain 402 634 IPR002772 GO:0004553|GO:0005975
Ssu6g2414 777 PRINTS Glycosyl hydrolase family 3 signature 282 300 IPR001764 GO:0004553|GO:0005975
Ssu6g2414 777 PRINTS Glycosyl hydrolase family 3 signature 114 133 IPR001764 GO:0004553|GO:0005975
Ssu6g2414 777 PRINTS Glycosyl hydrolase family 3 signature 208 224 IPR001764 GO:0004553|GO:0005975
Ssu6g2414 777 PANTHER GLYCOSIDE HYDROLASE FAMILY 3 PROTEIN 5 776 - -
Ssu6g2414 777 PANTHER SUGAR HYDROLASE-RELATED 5 776 IPR044993 GO:0009044|GO:0045493
Ssu6g2414 777 Pfam Glycosyl hydrolase family 3 N terminal domain 107 359 IPR001764 GO:0004553|GO:0005975
Ssu6g2414 777 Pfam Fibronectin type III-like domain 702 769 IPR026891 -
Ssu6g2414 777 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 402 637 IPR036881 GO:0004553|GO:0005975
Ssu6g2414 777 SUPERFAMILY (Trans)glycosidases 41 400 IPR017853 -
Ssu6g2414 777 Gene3D - 388 634 IPR036881 GO:0004553|GO:0005975
Ssu6g2414 777 Gene3D - 53 376 IPR036962 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2414 Ssu-Chr6 56411184 56419099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2414 25 777 Glycoside Hydrolase AT1G78060 64.512 0.0 1006
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2414 - - gmx:100780688 1357.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2414 6 56411184 56419099 Ssu6g2414 6 56411184 56419099 ECH
Ssu6g2414 6 56411184 56419099 Ssu1g3083 1 80594149 80600231 PCT