Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3083 ATGGGCCTCCCAGTCCCAGCACCCTTGACCTTTGCCACCATCCTTTTCCTCACTCTCCACCTCCGTGCCAGTGCTCAACCACCTTTCGCCTGTGACTGGTCGAACCCCTCCTCCAGATCCTACCCATTCTGCAACCCCAAGCTCCCCATCCCTCAGCGAACCAAGGACCTCCTCTCCCGCCTCACACTCGACGAGAAACTCTCCCAGCTCGTCAACACAGCCCCTCCCGTCCCCCGCCTCGGCATCCCCGCCTACGAGTGGTGGAGCGAGGCCCTCCACGGCGTCGGAAGCGTGGGCCGCGGCATCCGCTTCAACGGCACCGTCGCGTCCGCCACCAGCTTCCCTCAGGTCATCCTCTCCGCCGCCGCCTTCGACTCGCGCCTCTGGTACCGAATCGGGCGGTCCATCGGGATCGAGGCCAGGGCAATCTACAATGCGGGCCAGGCCCGGGGGCTCACGTTCTGGGCTCCCAATATTAACGTGTTTAGGGACCCCAGGTGGGGCAGGGGGCAAGAGACAGCTGGCGAAGACCCTCTCGTCGCTTCCCGCTATGCGGTTTCGTACGTCAGAGGACTCCAGGGGGATTCCTTCGACGGAGGCAAATTGAGGGGGCACCTTCAGGCCTCCGCCTGTTGCAAGCATTTCACGGCTTATGATTTGGACAATTGGAAGGGCGTTGATCGCTTTCTCTTCGATGCTCGCGTATCTTTACAAGATTTAGCGGATACATATCAACCTCCGTTTCAGAGTTGCGTACGGCAAGGACGAGCCAGTGGGATAATGTGTGCTTACAATCGTGTCAACGGGGTTCCAAACTGTGCGGATTTCAATCTGTTAACTAAAACCGCCAGAAAACAATGGGGTTTCCATGGGTATATTACGTCGGATTGTGGAGCAGTGGGGATCATACATGACAAGCAAGGGTATGCAAAATCAGCAGAGGATGCTGTAGCCGATGTTCTTCGGGCTGGGATGGACGTGGAATGTGGTTCTTATTTAACGGATCATGCAAAATCagcagtgttgcagaaaaaaaTACCCATGTCTCAAATAGACCGTGCCCTTCACAATCTGTTTTCAATTAGAATGAGGCTAGGCCTGTTTGATGGAAATCCAACCAGGCTCTCATTTGGCTTGATTGGCCCCAGTCATGTCTGTTCCAAAGAGCACCAATATCTAGCTCTTGAAGCTGCAAGAAATGGCATTGTCCTCTTAAAAAACACTGCAGCACTTCTCCCACTTCCAAAAACAAGCCCCAGTATTTCCTTAGCAGTGATAGGTCCCAATGCCAATGCTTCTCCGCTAACTCTTCTAGGAAACTATGCTGGCCCTCCTTGTAAATACGTGACAATATTGCAAGGGTTTCAGCACTATGTTAAGAACGCCGTTTATCATCCTGGATGTGATGGTGGACCAAAGTGTCCTTCGGCTCAAATAGACCAGGCAGTGGAAGTTGCAAAAAAAGTGGATTATGTGGTGCTGGTAATGGGATTGGATCAAAGTGAAGAGAGGGAAGAACGTGATCGCATTCACCTAGACTTGCCAGGCAAGCAACTGGAACTCATCAACAGCGTTGCCGAAGCTTCTAAGAAACCAGTTATTCTGGTGCTCCTTTGTGGAGGGCCTATAGATATCAGTTCAGCCAAGTATAACCCCAAAATTGGAGGCATCCTCTGGGCTGGTTATCCGGGGGAATTAGGAGGCATTGCACTTGCGCAGATTATCTTTGGCGACCACAACCCAGGAGGAAGACTACCAATTACTTGGTACCCAAAAGATTACATCAAAGTACCAATGACAGACATGAGGATGCGAGCTGATCCTTCAACCGGCTATCCTGGGAGAACTTACCGATTTTACAAGGGTCCGAAGGTGTATGAATTTGGCTATGGACTAAGCTACTCAAAGTATTCCTATGAGTTCGTTTCTGTTACACATGACAAGCTTCACTTCAACCAATCATCCACTCATTTGATGGCTGAAAATTCAGAAACCATCAGGTACAAATTAGTTTCGGAGTTGGGTGAACAAACCTGCCACAGCATGTCGGTCTCGGTCACAGTGAGAGTTCAAAATCGGGGAAGCATGGTGGGGAAGCATCCAGTATTGCTATTTATGAGGCCAAGAAAACAGAAAAGTGGTAGTCCTATGAAACAATTGGTGGGTTTCCAGAGTGTGATGCTTGATGCAGGGGAAATGACTCATGTTGGATTTGAGGTAAGCCCTTGTGAGCATCTTAGTAGAGCAAATGAAGCTGGTGCAAAGATAATAGAAGAAGGGTCTCATTTGTTGCTTGTGGATGATCAAGAGCTCCCAATAGATATAATTGTTTGA 2334 0.4996 MGLPVPAPLTFATILFLTLHLRASAQPPFACDWSNPSSRSYPFCNPKLPIPQRTKDLLSRLTLDEKLSQLVNTAPPVPRLGIPAYEWWSEALHGVGSVGRGIRFNGTVASATSFPQVILSAAAFDSRLWYRIGRSIGIEARAIYNAGQARGLTFWAPNINVFRDPRWGRGQETAGEDPLVASRYAVSYVRGLQGDSFDGGKLRGHLQASACCKHFTAYDLDNWKGVDRFLFDARVSLQDLADTYQPPFQSCVRQGRASGIMCAYNRVNGVPNCADFNLLTKTARKQWGFHGYITSDCGAVGIIHDKQGYAKSAEDAVADVLRAGMDVECGSYLTDHAKSAVLQKKIPMSQIDRALHNLFSIRMRLGLFDGNPTRLSFGLIGPSHVCSKEHQYLALEAARNGIVLLKNTAALLPLPKTSPSISLAVIGPNANASPLTLLGNYAGPPCKYVTILQGFQHYVKNAVYHPGCDGGPKCPSAQIDQAVEVAKKVDYVVLVMGLDQSEEREERDRIHLDLPGKQLELINSVAEASKKPVILVLLCGGPIDISSAKYNPKIGGILWAGYPGELGGIALAQIIFGDHNPGGRLPITWYPKDYIKVPMTDMRMRADPSTGYPGRTYRFYKGPKVYEFGYGLSYSKYSYEFVSVTHDKLHFNQSSTHLMAENSETIRYKLVSELGEQTCHSMSVSVTVRVQNRGSMVGKHPVLLFMRPRKQKSGSPMKQLVGFQSVMLDAGEMTHVGFEVSPCEHLSRANEAGAKIIEEGSHLLLVDDQELPIDIIV 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3083 777 Gene3D - 387 635 IPR036881 GO:0004553|GO:0005975
Ssu1g3083 777 SUPERFAMILY (Trans)glycosidases 41 400 IPR017853 -
Ssu1g3083 777 PANTHER GLYCOSIDE HYDROLASE FAMILY 3 PROTEIN 19 776 - -
Ssu1g3083 777 PANTHER SUGAR HYDROLASE-RELATED 19 776 IPR044993 GO:0009044|GO:0045493
Ssu1g3083 777 Pfam Glycosyl hydrolase family 3 C-terminal domain 402 634 IPR002772 GO:0004553|GO:0005975
Ssu1g3083 777 Pfam Fibronectin type III-like domain 702 768 IPR026891 -
Ssu1g3083 777 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 402 637 IPR036881 GO:0004553|GO:0005975
Ssu1g3083 777 Pfam Glycosyl hydrolase family 3 N terminal domain 108 358 IPR001764 GO:0004553|GO:0005975
Ssu1g3083 777 Gene3D Immunoglobulins 664 775 IPR013783 -
Ssu1g3083 777 Gene3D - 53 375 IPR036962 GO:0004553|GO:0005975
Ssu1g3083 777 PRINTS Glycosyl hydrolase family 3 signature 282 300 IPR001764 GO:0004553|GO:0005975
Ssu1g3083 777 PRINTS Glycosyl hydrolase family 3 signature 208 224 IPR001764 GO:0004553|GO:0005975
Ssu1g3083 777 PRINTS Glycosyl hydrolase family 3 signature 114 133 IPR001764 GO:0004553|GO:0005975
Ssu1g3083 777 SMART Fn3_like_2 700 770 IPR026891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3083 Ssu-Chr1 80594149 80600231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3083 17 777 Glycoside Hydrolase AT1G78060 65.314 0.0 1033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3083 - - aprc:113867121 1433.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3083 1 80594149 80600231 Ssu1g3083 1 80594149 80600231 ECH
Ssu6g2414 6 56411184 56419099 Ssu1g3083 1 80594149 80600231 PCT